Deinococcus geothermalis: Dgeo_0255
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Entry
Dgeo_0255 CDS
T00353
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dge
Deinococcus geothermalis
Pathway
dge03030
DNA replication
dge03430
Mismatch repair
dge03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dgeo_0255
03430 Mismatch repair
Dgeo_0255
03440 Homologous recombination
Dgeo_0255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dge03032
]
Dgeo_0255
03400 DNA repair and recombination proteins [BR:
dge03400
]
Dgeo_0255
Enzymes [BR:
dge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Dgeo_0255
DNA replication proteins [BR:
dge03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Dgeo_0255
DNA repair and recombination proteins [BR:
dge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Dgeo_0255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
T2SSK
DUF655
Motif
Other DBs
NCBI-ProteinID:
ABF44558
UniProt:
Q1J1S6
LinkDB
All DBs
Position
242553..246521
Genome browser
AA seq
1322 aa
AA seq
DB search
MTAAEPTAPHIHLPDGSCCGPKKFAHLHQHTQYSLLDGAAKLKDLLKWVKEVTPHDPACA
MTDHGNMHGAVHFYNYASQLGVKPILGYEAYVVPGFGTRRDKKPGVSGEKGIFHLTLLAR
DFTGYQNLCRLSSRGYTEGYYYKPRIDHELLQEHHQGVIAFSGCLGSEVQQLLLQGREDE
AKARLLWYRDLFGENYFIEIQDHGLPEQKRNNPILRAWAQELGIGMVATNDGHYVKKTDA
TAHEALLAIQTKATLADENRFKFPCDEFYVKGLEEMQKALPVAEWGEEPFDNTAHIASIC
NVDLPVGKKRVYQMPALPIPEGRTMAEELRVQTYRGAMKRYPAHVTEGLLRDYALRSLEA
LGPEDGARVLVRVGGADPATCDLETLFTLLAFMGSEWEARGKAAGEKYTPYPALEAMEAA
AAAGALPPYAHEDCRRARQGDSDTAIELDPEADDSETTRSHHQHALTVLRRAEYELSVIN
NMGFPDYFLIVADYIGWAKDQGISVGPGRGSGAGSLVAYAIRITNLDPLEFELLFERFLN
PDRISMPDFDIDFNDARRGEVIGYVQGKYGDDKVAQIATFGTMASKACLKDVARVMGLEY
AKVDKVSKLIPIKFGKSYSLEQAREAVPDIQQMLAEDAQLREAYEFAQKLEGLTRHASVH
AAGVVIGRSQLTDLVPVMRDTSGEGMVCQYDMKAVEDIGLIKMDFLGLRTLSFLDEAKRI
MRESKGVEIDFDAIPFDDEKTFELLSRGDTKGVFQLEGAGIADASRRLKPRRLADIIALS
ALYRPGPMENIPTYVRRHHGAEPVTYDEFPHSAKWLEKILAETYGIPVYQEQIMQIASEV
AGYSLGGADLLRRAMGKKDAEEMKRQRQLFVEGAEKNGVPKEEGNRLFDLLDAFANYGFN
KSHSAAYGVITYQTAWLKANYPVEFMAALLTVERRDSDKVAEYVSDARKMNVRVLPPDIN
RSSADFAVHGEEILFGLYAIKGLGEGAVQKILEEREKNGPFRSLADFCSRLGHKVCNRKA
MESLIKSGAFDGFGERHQLMESLEEAMAWAQGAAALAQSGMDALFGMAETAPEPKLKAGV
APYTDLQRLAIEKEALGLYISGHPLEQHEGLREAASCRISDLDTWFQAQNVAPGKRVKAV
LAGMIENVVKKPTKSGGMMARFILADESGQTELVAFSRAYDRIQEKLVNDTPALVIVELE
SEDGGLRAIAEEIVSVEQLAEVPKVMYVTIDLETATPDALGEFQSVLDEHAGSMPTYLRL
ETPEQFVLYQLEHKIGSPEAIRVLNSTFPWANAYLAYDQSTILGRFAPKPPAWMGKGRAM
QA
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccgaaccgactgctccccacattcatctgccggacggctcctgctgcgga
cccaaaaagttcgcgcacctgcaccagcacacccagtacagcctgcttgacggcgcggcc
aagctcaaggacctgctgaagtgggtcaaagaggtcacgccccacgaccccgcctgcgcg
atgacggaccacggcaacatgcatggcgcggtgcatttctacaactacgcctcacaactg
ggtgtgaagccgattctgggctatgaagcctatgtcgtccccggcttcggcacgcggcgc
gacaagaaacccggcgtgagcggcgagaagggcatcttccacctcaccctgctggcccgt
gactttaccggctaccagaacctctgccgcctgagcagccgcggctacaccgagggctac
tattacaagccgcgcatcgaccacgaactcttgcaggagcatcaccagggggtcattgcc
ttttccggctgcctggggtctgaggtgcagcaactcctcctccagggccgcgaggacgag
gctaaggcgcgcctgctgtggtaccgcgacctctttggcgagaactacttcatcgagatt
caggaccacggcctgccggaacagaagcggaataaccccatcctgcgagcctgggcgcag
gaactcggcatcgggatggtcgccacgaacgacggtcattacgtcaaaaagaccgacgcg
acggctcacgaagctctgcttgccatccagaccaaagcgaccctggccgacgagaatcgc
ttcaagtttccctgcgacgagttctatgtgaagggcctggaggagatgcagaaggccttg
ccggtcgccgagtggggcgaggagcccttcgacaacaccgcccacatcgcctccatctgc
aacgtggacctgccggtgggcaagaagcgcgtgtaccagatgcccgccctccccattccg
gagggccgcacgatggccgaggaactgcgggtgcagacgtaccgcggcgccatgaaacgg
tatccagcgcacgtgacggaggggctgctgcgtgactacgcgctgcgctcactggaggcc
ctcgggccggaggacggtgccagagtcctggtccgcgtggggggggctgaccccgccacc
tgcgacctcgaaacgctctttactctcctggccttcatgggcagcgagtgggaggcgcgc
ggcaaggcggcgggggagaagtacacgccttacccggcgctggaggccatggaagcggca
gcggcggccggagcgctccccccttacgcccacgaggattgccgccgggccagacagggg
gacagcgacacggccatcgaacttgacccggaggcggacgattccgagaccacccgttcc
caccaccagcacgccctgaccgtcctgcgccgcgccgagtacgaactctcggtgatcaac
aacatgggctttcccgactatttcctgatcgtcgcggactacatcggctgggcgaaagat
cagggcatcagcgtggggccggggcgcgggtcgggcgcggggtcgctggtcgcctacgcc
atccgcatcaccaacctcgatccgctggaattcgagctgctgttcgagcgctttctgaac
cccgaccgcatctccatgcccgacttcgacatcgacttcaacgatgctcgccggggtgaa
gtcatcgggtacgtgcaggggaagtacggcgacgacaaggtcgcacagatcgccaccttc
gggacgatggcgagcaaggcttgcctcaaggacgtggcgcgcgtgatgggcttggagtac
gccaaggtcgataaggtctccaagctcatcccgattaagtttggcaagagctactcgctg
gaacaggcccgcgaggcggttcccgacattcaacagatgcttgccgaagatgcgcagctg
cgggaagcctacgagttcgcccagaaactcgaagggctgacccgccacgcttccgtccat
gcggcgggggtcgtgatcggcaggtcgcagctcaccgacctcgtccccgtgatgcgcgac
acctccggcgagggcatggtctgccagtacgacatgaaggccgtcgaggacatcggcctg
atcaagatggacttcctggggctgcggacgctgtctttcctggatgaagccaaacgcatc
atgcgcgagtcaaagggcgtcgagatcgatttcgacgcgattcccttcgatgacgaaaag
acctttgaactcctctcgcgcggcgacaccaagggggtcttccagctggaaggcgcgggc
atcgcggatgcctcccgccgtctcaagccccgccgtctcgcggacatcatcgcgctctcg
gcgctctaccgccccggcccgatggagaatatccccacctacgtccgccgccaccacggc
gccgaacccgttacctacgacgaattcccccacagcgcgaagtggctggaaaaaatcctg
gcagaaacctacggcatccccgtctatcaggagcagatcatgcagatcgcttcggaggtg
gccgggtactccctgggcggggcggatctgctgcgccgcgcgatgggcaaaaaggacgcc
gaggagatgaagcgccaacgtcagctttttgtggagggcgctgagaaaaatggcgtgccg
aaagaggagggaaaccggctatttgacctgctggacgcctttgccaactacggcttcaac
aagagtcacagcgccgcctacggggtcatcacttaccagacggcctggctcaaggccaat
tatccggtggaattcatggcggcgctcctcacggttgagcggcgcgattccgacaaggtc
gccgagtacgtcagtgatgcccgcaagatgaatgtgcgggtgctgccccccgacatcaac
cgctcttccgcggactttgcggttcacggtgaagaaattctcttcgggttgtacgcgatc
aaggggctgggcgagggtgcggtccaaaagattctggaggaacgcgagaaaaacgggccg
ttcaggtcgttggccgacttctgctcgcggctgggccacaaggtctgcaaccgcaaggcg
atggaatctctgatcaagtcgggggcctttgacggctttggcgagcgccatcagctgatg
gagagcctggaagaggcgatggcctgggcacagggcgcggcggcgctggcgcaaagcggc
atggacgccctctttggcatggcggaaaccgcgccggagccaaaactcaaggcaggagtc
gcgccgtacaccgaccttcagcgcctcgccatcgagaaagaagcgctgggcctctacatc
agtggccatcccctcgaacaacatgagggcctgcgcgaggccgcgagctgccgcatcagt
gacctcgatacctggttccaggcgcagaatgtcgcgccgggcaagcgcgtgaaggcggtg
cttgccggcatgatcgagaatgtggtcaagaagcccaccaagtcgggcggcatgatggcc
cgcttcatcctggccgacgagtcggggcagaccgaactggtcgccttctcgcgcgcctac
gaccgtatccaggaaaagctggtgaacgacacgcccgccctggtcatcgtcgagctggag
tccgaagacggcggcctgcgggccatcgccgaagagattgtcagcgtagaacagcttgcc
gaggtgcccaaggtcatgtatgtgaccatcgacctggagacggccacacccgacgcgttg
ggtgagttccagagtgttctggacgaacacgccgggtccatgcccacctacctgcgtctg
gaaacccccgagcagttcgtgctctaccagctcgaacataaaataggcagcccggaggcc
attcgcgtcctcaacagcaccttcccctgggccaatgcctacctcgcctatgaccagagc
accatcctgggccgttttgcgcccaagccgcccgcgtggatggggaaggggcgggcgatg
caggcgtga
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