Deinococcus geothermalis: Dgeo_0442
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Entry
Dgeo_0442 CDS
T00353
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dge
Deinococcus geothermalis
Pathway
dge03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Dgeo_0442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dge03400
]
Dgeo_0442
Enzymes [BR:
dge01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Dgeo_0442
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Dgeo_0442
DNA repair and recombination proteins [BR:
dge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Dgeo_0442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
DZR
Zn_ribbon_6
DZR_2
Zn_ribbon_IS1595
DUF7573
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ABF44745
UniProt:
Q1J189
LinkDB
All DBs
Position
455966..456835
Genome browser
AA seq
289 aa
AA seq
DB search
MPELPEVETTRRKIEPLLAGRIILNIAHNAPQRYRDTALAHGRRISGLSRRGKYLILHLV
PPEARSDEPHDLELIVHLGMTGGFRLEEGPHTRVTLTTDAGQLYFNDPRRFGKMAVVPAG
AYGGMPTLAAMGPEPLSDDFREEDFVRRAAWAGAVKPWLLSQKPVSGVGNIYADESLWRA
RIHPAQTNLSAPEAGRLYRAIREVMAEAVAAGGSSLGDGPGNYRQHDGAVGFFQGQHAVY
GRTGQLCPRCGTPIQKMVLAQRGTHFCPACQPLRVEDSQQRHAEGGSHA
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaactgcccgaggtcgaaaccacgcgccgcaagatcgagccgctgctcgcgggg
cgcatcatcctcaacattgcccacaacgcaccccagcgctaccgcgacacggccctggcg
catggccgccggatcagcggcctgtcacgccgcggcaagtacctgatcctgcacctggtc
ccgccggaggcgagatcggacgagcctcacgatctcgaactgatcgtgcatctgggcatg
acgggcgggttccggctggaggagggtccccacacccgcgtcacgctcacaaccgacgcg
ggccaactctacttcaatgacccgcgccggtttggcaagatggcggtcgtgcccgcagga
gcgtatggcggcatgcccactctggccgcgatgggaccggaaccgctctcggacgacttc
cgggaggaagacttcgtgcgccgggcggcgtgggccggggccgtcaagccctggctgctt
tcgcaaaagccggtcagcggcgtggggaacatctacgccgatgaaagcctctggcgtgcc
cgaattcaccccgcgcagaccaacctgagtgccccggaggcgggccgtctctaccgcgcc
atccgcgaagtgatggccgaggcggtagcggcgggcggcagctcccttggcgacggccct
ggcaactaccgtcagcatgacggtgcagtgggtttcttccaggggcagcatgccgtctat
ggccgcaccggtcagctctgcccgcgctgcggcacgccgatccagaaaatggtgttggcc
cagcggggaacgcatttctgtccggcgtgtcagccgctgcgggtggaagacagccagcag
cgacacgctgaaggaggttcccatgcctga
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