Deinococcus geothermalis: Dgeo_0545
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Entry
Dgeo_0545 CDS
T00353
Name
(GenBank) transcription factor CarD
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dge
Deinococcus geothermalis
Pathway
dge03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dgeo_0545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dge03400
]
Dgeo_0545
Enzymes [BR:
dge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dgeo_0545
DNA repair and recombination proteins [BR:
dge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dgeo_0545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABF44847
UniProt:
Q1J0Y7
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All DBs
Position
574739..577864
Genome browser
AA seq
1041 aa
AA seq
DB search
MTVAAPNLSKLLPTAPVGNVLLLPQVARAALFAAYPGPAVLLTTPERVTLYASAGALGAP
VSVNPGLRDWDSKHEHVVLDVNTALDLFPTHPEDHALTLRVGASYPREDLLNRLERLGYE
RDEEPGYFLRGDTLELRLEPGAGVPNGEDPVWLRAEFFGDELDTLRRLLPGELTGERIQT
FTLEPTADYLTEVKWDATRLDLLPGRVFLDAPEFYASSLGPLIDTLWPRLREREVTSFGR
APLELTDVDLGLKVLPYYRARLSELERDVAEWRGAGYRVMILVRHDRTAAYLADKLLGTH
EIPWRSVPRVEEGALGFLRAGGEGGFAIPEHRTVVLTEDLIYGFQGGSALRGKKLVGKPV
TDALGLHVGDYLIHPEHGIGQFQGLETRTVLGVTRDYLNLEYRGGARLAVPIEQLPVLRR
HPGTTDDPPVLSSFDKKDWARAKEKARKNAEEVAARLLVQYAARQVTPGNSFPPQPEWDA
QVERNFKFELTADQKTALKETMRDLEAPHPADRLISGDVGFGKTEVALRAAHRVVGHGKQ
VAMLVPTTLLAEQHTSTFVERFKDLPVRVEGLSRFTGDKQAKAILADLAAGKVDIIIGTH
RLLSSDVQFKDLGLIIVDEEHRFGVGQKEKLRALRGLPDVPKDGKLELPEGVKAVDTLAL
SATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLAPFDPVTVRDAILNEIERGGKVFY
IHDRIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLSTTIVETG
LDIPEANTILIERADRLGLAQLYQLRGRVGRRQQTAYAYLFYPPRMTENAQRRLWAIADL
QDLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTEMLAEAVARLKGEPLEAPPT
VSIDLPINARLTPEYFDGNEEERIATYGRLSEARTLQAVSRVERDLRKKYGPPTPEVQNF
IDLAKLRLTAVAKRALSIGETMTHLQITFAYKSLDYDAAGLKRFPHKTEVTTFPPAVKVE
KKGLKPDDYARVLIEVLGYFG
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgtcgccgcccccaacctctccaagctcttgccgactgcgccggtggggaatgtg
ctgctgctgccgcaagttgcgcgcgcggcgctgtttgctgcctatcccggccccgctgtg
ctgctcaccacacctgaacgcgtgacgctctacgcctcggcgggggcactgggggcaccg
gtcagcgtgaatcccggcctgcgtgactgggacagcaaacacgagcatgtcgtgctggat
gtcaacacggccctcgacctgttccccacccaccccgaggaccacgccctgaccctccgc
gtcggcgcgagctatccgcgcgaggatctactcaaccggctggaacgcttgggctacgag
cgcgatgaggaaccggggtacttcctgcgcggcgacacgctggaattgcgcctggagcca
ggggcgggcgtcccgaacggggaagaccctgtgtggctgcgcgccgagtttttcggagac
gagctggataccctgcgccgccttctccccggcgagctgaccggcgagcgcatccagacc
ttcacgctcgagcccaccgccgactacctcaccgaagtgaagtgggacgctacccgcctc
gacctgctgccgggccgggtcttcctcgatgcgcccgagttctacgcctcctcgctgggg
ccgctgatcgacacgctctggccccggctgcgcgaacgggaggtcacgagttttggccgc
gcgcctctcgagctgaccgacgttgacctggggctcaaggtgctgccctactaccgcgct
cgcctctcggagttggagcgcgacgtggccgagtggcgtggggcgggttaccgggtcatg
atcctggtgcgccatgaccgcacagctgcgtatctggccgacaagctgctgggtacccac
gagattccctggcggagcgtgccgcgggtggaggaaggagcactcggcttcctgcgcgcg
ggcggtgaaggcggcttcgccattcccgaacaccgcacggtcgtgctcaccgaagacctg
atctacggcttccagggcggctcggccctgcgcggcaagaagctggttgggaagccggtc
acggacgcgctgggcctgcacgtgggtgactacctgattcaccccgaacacggcatcggg
cagttccaggggctggagacacgcaccgtcttgggcgtcacccgcgattacctcaatctg
gagtaccgcgggggcgcccggcttgcggtgcccatcgagcagctgccggtgctgcgccgt
caccccggcaccaccgacgacccgcccgtgctgtcctccttcgacaagaaagactgggcc
agagcgaaagaaaaggcccgcaagaacgcggaggaggtcgccgctcggctgctggtgcag
tatgccgcccggcaggtcacgcccggtaactcgtttccgccccagcccgagtgggacgcg
caggtcgagcggaacttcaagttcgagctgacggcagaccagaagaccgcgctgaaggag
acgatgcgcgacctcgaagccccgcacccggccgaccgcctgatctcgggcgatgtgggc
tttggcaagacggaagtggccctgcgcgccgcgcaccgcgtcgttggccacggcaagcag
gtggcgatgctggtgcccacaacgctgctggccgagcagcacacctccaccttcgtcgaa
cgctttaaggacctgcccgtgcgggtagagggcttatcgcgcttcacaggcgacaaacag
gcaaaggcgattctggcggacctcgcggcgggcaaggtggacatcatcatcgggacgcac
cgccttctttccagcgacgtgcagttcaaggatcttggcctcatcattgtggacgaggag
caccgtttcggggtggggcagaaggaaaagctgcgggcgctgcgcggcctgccggacgtc
cccaaggacggcaagctggagcttcccgagggggtgaaggcggtggacaccctggccctg
tccgcaacgcctattccgcgcaccctctacatgagcatggtgggcctgcgcgatatgagc
tccattcagacgccgcctaagggccgcaagcccatccagacggtcctggctccctttgat
cccgtgacggtgcgcgacgcaatcctcaatgagatcgagcgtggcggcaaggtcttctac
atccacgaccgcatcgcctccatcggggcgcgcagcttgtacctccgcaaccttgttccc
gaggcacggatcggtgtggcgcacgggcgcatgaacgaggaagaactcgaagagatcatg
ctgggcttcgagcagggcgccttcgacgtgctgctctccaccacgattgtcgagactggg
ctagacattcccgaggcaaacaccatcttgatcgagcgggcggatcgtcttggcctggcc
cagctctaccagctgcgcgggcgcgttggcagacggcagcagaccgcctacgcctacctc
ttctatccgccgcgcatgaccgagaacgcgcagcgccggctgtgggcgatcgctgacctg
caagacctcggctccggacatctgctcgccgagaaagacatggagattcgtggggttggc
aacatcctgggagaagagcagcacggacacgtgcaggctgtctccatcgacgtgtacacc
gagatgttggccgaggccgtcgcgcggctgaagggcgagccgctggaagccccacccacc
gtcagtatcgacctccccatcaacgcccgcctcacgcccgaatacttcgacggcaacgag
gaggagcgcattgcgacctacggacggctctcggaagcgcgcacccttcaggcggtcagc
cgcgtcgaacgcgatctgcgcaagaagtacggccccccgacacctgaggtccagaacttc
atcgacctcgccaagctgcgcctgaccgcggttgccaagcgagcgctgagcatcggggag
acgatgacgcacctgcagatcacgtttgcctacaagtccctcgattacgacgcagcgggt
ctgaaacgttttccccacaagaccgaagtcacgaccttcccgcccgccgtcaaggtggag
aaaaaggggctgaagccggacgactacgcgcgggtgttgatcgaggtgctgggatatttc
gggtga
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integrated database retrieval system
