Deinococcus geothermalis: Dgeo_0635
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Entry
Dgeo_0635 CDS
T00353
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dge
Deinococcus geothermalis
Pathway
dge03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dge00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dgeo_0635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dge03021
]
Dgeo_0635
03400 DNA repair and recombination proteins [BR:
dge03400
]
Dgeo_0635
Enzymes [BR:
dge01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dgeo_0635
Transcription machinery [BR:
dge03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dgeo_0635
DNA repair and recombination proteins [BR:
dge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dgeo_0635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
DUF244
Motif
Other DBs
NCBI-ProteinID:
ABF44937
UniProt:
Q1J0P7
LinkDB
All DBs
Position
complement(685249..689862)
Genome browser
AA seq
1537 aa
AA seq
DB search
MKDFSKVRIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAA
QLEKVLYFSSFLVTDPRNAQKDGRPLRRGELLSDDEYRELRFGRQETYTLPSGTEAAVRD
GEYVTRGQVLGGNVVSKMDGLAQYRFPRRAEIAYAEEAEASLPLPSDVLVQQDSFRPGEI
LAELEGDVQITAPVDGTAFLLDMGEDSVLVELRDSAAEDAAQGEVLARVYIPHGMNVQVA
EGEVVEAGSVLATAAAGDRLRVSRDSRLSNVNFPKKKGDVKVTAHWTRRVEYRIEPQMHV
LVGDGSEVRKGQKVVGAIDKEEEVIAEADGVITLHAPASIIVSKARVYAYQDEPLVVNGD
RVEPGDELADSGNLRSEISGRVEIDLVRKQVRVIESYDFEAKMGAEAVKELLDDLDLDQL
EAELSEQMKDNSRHKRAKARKRLEVVRAFKRSGNHPSWMILETVPVMPPDLRPMVQVDGG
RFATSDLNDLYRRLINRNNRLKKLIGQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVTN
PGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGVPKRMALELF
KPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLGI
QAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSAHNLLSPA
NGEPNVKPSRDIILGIFTLTQLRKDNLGAGSEFANEQDALKALDEGRVALNTPIRVNGVE
TSPGRLKYVFSSPDEAIMAVDRGEIDYQDHVRIRLNGTVYETSAGRVMFRRLVQEALGAQ
GHLVDTLVNLDTAYEKDSLKDMVMACYKELGIEATAGLLDALKDSGFKLSTISGITIGID
DIVLPPNKRELLAEADEKLAAIEQNYEFGFMTDEERYKQVVQLWNDTTDEVKNAVFENFS
RNYPFNPLWIMSQSGARGNPQQIRQLAGMRGLMARPDGSTIEVPIRASFREGLTVLEYFI
STHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYTVMPLGTTDERTGEW
RTRKGSEIETAIYGRTLTADVELSDGRVIPAGQMLSLEDVKAITRDAKAIGEVFVRTPLN
CRVRAGVCQKCYGYDLSQAKPVSLGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGGDIT
MGLPRVIELFEARKPKTQAVVADRDGVVRIEEEEERYLVRIEAEDEAFSSKTPMKISKSL
RLIVRDGDHVEAGQPLTRGAINPHDLLLYKDTDAAQRYLVEEVQRVYRSQGVKVHDKHIE
VIVRQMLRYVEITDGGDTDLLEGQTVERWEVDQANDALPEGKTPASWKPVLLGITKSSLT
TKSWLSAASFQHTTHVLTEASMRGQVDELIGLKENVILGKLIPAGTGLTTVREMQVADER
TLEKYGQTSVSTDAVTGSQRYDDTRPSSTSINPSYGD
NT seq
4614 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttcagcaaggtccgtatcgccatcgccagccccgcgaagattcgcgagtgg
agctttggtgaggtggaaaagccggaaaccatcaactaccgcaccctgaagcccgagcgc
gaagggctgtttgacgagcgcatcttcgggcccatcaaggattacgagtgcgcctgcggc
aagtacaagcgccaacgctacgagggcaaggtctgcgaacgctgtggcgtcgaggtgacc
tcctccaaggtgcgccgctaccgcatgggccacatcgatctggcgacgcccgccgcgcac
atctggtatgtgaaggacacgccgagcaagatcggcacgctgcttgacctgtcggcggcg
cagctggaaaaggtgctgtacttcagctccttcctggtgaccgatccgcgcaacgcgcag
aaggacggccgtcccctgcgccgaggcgaactcctcagcgacgacgagtaccgcgagctg
cgcttcgggcggcaggagacgtacacgctgcccagcggcaccgaagcggcggtgcgtgac
ggcgagtatgtgacgcgcggacaggtgctgggcggcaacgtggtcagcaagatggacggc
ctcgcgcagtaccgcttcccgcgccgcgccgagatcgcctacgccgaggaggccgaggcc
agtctgcccctgcccagcgacgtgctggtgcagcaggacagtttccgccccggcgagatt
ctggccgaactcgagggggacgtgcagatcactgctccggtagacggcacggctttcttg
ctcgacatgggcgaggacagcgtgctggtggagctgcgtgacagcgccgccgaggatgct
gcacagggcgaggtgctggcccgcgtgtatatcccacatggcatgaacgtgcaggtggcc
gagggcgaggtggtcgaagccggaagcgtgctggcgaccgccgcggccggagatcgcctg
cgtgtgagccgcgacagccgcctcagcaatgtcaacttccccaagaagaagggggacgtc
aaggtcacggcacactggacccgccgcgtcgagtaccgcatcgaaccgcagatgcacgtg
cttgtcggggacggcagcgaggtccgcaagggccagaaggtcgtcggcgcgattgataag
gaagaagaggtcatcgcggaagccgacggcgtcatcactctgcacgcgcccgcctcgatt
attgtcagcaaggcccgggtgtacgcttaccaggacgagccgctcgtggtgaatggcgac
cgggtggagccgggggacgagctggccgactcgggcaacctgcgctcggagatctcgggc
cgggtggagatcgatctggtgcgcaagcaggtgcgcgtgattgagtcctacgacttcgag
gccaagatgggcgccgaagccgtcaaggagctgctcgacgatctggacctcgaccagctc
gaagctgagctgagcgagcagatgaaggacaacagccgccacaagcgcgccaaggcccgc
aagcggctggaagttgtgcgcgcctttaagcgcagcggcaaccacccctcctggatgatc
ctggagacggtgccggtgatgccgcctgacctgcgcccgatggtgcaggtggacggcggg
agattcgcgacttcggacctcaacgacctgtaccgccgcctgatcaaccgcaacaaccgc
ctgaagaagctcattgggcagggcgcgcccgacatgatcatccgcaacgagaagcgcatg
cttcaggaggcggtggacgccctgattgacaacgggcggcgcggctcacccgtcaccaac
cctggttctgaccgcagcctgcgttccttgaccgacctgctgggtggcaagcagggccgc
ttccggcagaacctgctgggcaagcgcgtggactactcgggtcgaagcgtgatcgtggtc
ggcccgcagctcaagctgcaccagtgcggcgtgcccaagcggatggcactcgaactcttc
aagccctttctgttcaaggtgctcgaagaaaagggtgaggtcaccaacatcaagcaggcc
cgcaagatgctagagcggtaccgcgacacccgtgactctgtgtgggacgcactggaagag
gtgattgaggacaaggtcgtgctgctcaaccgcgccccgaccctgcaccgcctcggtatt
caggcgtttgagccggtgctggtcgaggggcagtccatccagctgcacccgctggtctgt
gaagccttcaacgccgactttgacggcgaccagatggcgattcacgtgccgctctcggcg
caggcgcaggccgaagcgcggatccagatgctctccgcgcataacctgctctcgcccgcg
aacggcgagccgaacgtgaagccctcccgcgacatcatcctgggcatcttcacgctgacg
caactccgcaaagacaacctgggcgccgggagcgagttcgccaacgagcaagacgcgctg
aaggcgctcgacgagggccgcgtggccctgaacacgcccatccgagtgaacggtgtggaa
accagtcctggtcgcctgaagtacgtcttcagctcgccggatgaggcgatcatggccgtg
gaccgcggcgagatcgattatcaggaccatgtccgcatccgcctgaacgggacggtgtac
gagaccagcgcgggccgcgtgatgttccgccgactcgtgcaggaggcgctgggagcgcag
gggcacctggtggataccctggtgaacctggacacggcctacgagaaagacagcctcaag
gacatggtgatggcctgctacaaggagctgggcatcgaggcgacggcaggcctcttggac
gcgctcaaggacagcggcttcaagctgtctaccatctccgggatcaccatcggcatcgat
gacatcgtgctgccgcccaacaaacgcgaactgctggcagaagccgacgagaagctggcg
gccatcgagcaaaactacgagttcggcttcatgaccgacgaggagcgctacaagcaggtc
gtgcagctgtggaacgacaccacggatgaggtgaagaacgcggtgttcgagaacttcagc
cgcaactaccccttcaatcccctctggatcatgagccagtcgggtgcccgtgggaatccg
cagcagattcgccagctcgccgggatgcgcggcctgatggcccgccccgacggcagcacc
atcgaggtgcccatccgtgcctcgttccgcgagggcctgacggtgctggagtacttcatc
tccacccacggcgcccgtaagggtggtgccgacacggcactccgtaccgccgactcgggt
tacctgacccgcaagctggtggacgtggcccacgaggtcgtcgtgcgcgacgtggactgc
gggaccaccgactacacggtgatgccgctgggcacgaccgacgagcgcaccggcgaatgg
cgcacccgcaagggcagtgagatcgagaccgcgatctatggccgcaccctgacggctgac
gtggaactgtcggatggccgcgtgatcccggccggccagatgctgagcctggaggacgtg
aaggcgatcacccgcgacgcgaaggccattggcgaggtgtttgtgcgcacgccgctgaac
tgccgcgtccgcgccggggtctgccagaagtgctacggctacgacctctcgcaggccaag
ccggtgtccttgggcgaggccgtgggcgtggtagctgccgaatccatcggcgaacccggc
actcagctcaccatgcggactttccacaccggtggtgtggcgggcggcggcgacatcacg
atgggtctgccgcgcgtgattgagctgttcgaggcgcgcaagcctaagactcaggccgtg
gtggccgaccgtgacggggtggtgcgcatcgaggaggaggaggaacgttacctggtccgc
attgaggccgaggacgaagccttcagctccaagacaccgatgaaaatcagcaagagcctg
cgcctgattgtgcgcgacggcgaccacgtggaagccgggcagccgctcacacgcggcgcg
atcaatccccacgacctgctgctgtacaaggacaccgacgccgcccagcggtacctggtg
gaggaagtgcagcgcgtgtaccgctcgcagggcgtgaaggtgcatgacaagcacatcgaa
gtgatcgtgcgccagatgctgcgctacgtcgagatcaccgacggcggcgacaccgacctg
cttgaagggcagacggtcgagcgctgggaagtcgaccaggcaaacgatgccctgcccgag
ggcaagacgcctgcgagctggaagccggtgctgctgggcatcaccaagagcagcctgacc
accaagagctggctgtcggctgcctccttccagcacacgacgcacgtgctgacggaagct
tcgatgcgcgggcaggtcgacgaactgatcggcctcaaggagaatgtgattctcggcaag
ctgatcccggcgggcacgggtctcaccaccgtccgcgagatgcaggtggccgacgagcgc
accctggagaagtatggccagacgagcgtcagcacagatgccgtgaccggcagccagcgc
tacgacgacacccgcccgagcagcacctccatcaaccccagctacggcgactga
DBGET
integrated database retrieval system
