Deinococcus geothermalis: Dgeo_2150
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Entry
Dgeo_2150 CDS
T00353
Name
(GenBank) beta-lactamase-like protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dge
Deinococcus geothermalis
Pathway
dge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dge00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dgeo_2150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dge03019
]
Dgeo_2150
Messenger RNA biogenesis [BR:
dge03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dgeo_2150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ABF46444
UniProt:
Q1IWE0
LinkDB
All DBs
Position
2262491..2264182
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AA seq
563 aa
AA seq
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MTNPAKDAQAGVATAPAAAEQFLEIIPLGGMGEIGKNITAYRFQDEIMVVDGGLAFPDPH
QLGVDLIIPRIDYLQQHADLIKGWILTHGHEDHIGGLPYILPRLPRVPVYGAPLTLGLVR
EKLSEFGVRESDVDLREVDLNAKIRIGRHFGVEFIRMTHSIPDNAGYILTTPVGRVLHTG
DFKLDEHPSDGKLSDLGRIEQVGREGVLLLISDSTNAERPGRTMSEAEVAKNLEDVIARC
RGRVFMTTFASNIHRIGNVIQIAHRLGRRVVMEGRSMLKYAQVAQQLGYMDLPEPLLSSE
EVGDLQDPQVLYVCTGSQGQPMSVLSRLAFGNHAKIALKRGDSVILSSNPIPGNEEAVNL
VINRLYEIGVDVYYPPTYRVHASGHGSQEELATVLNLARPKYFLPWHGEPRHQINHARLA
QTLPRPPRRTLIARNGDVVRLGPDEFRVTGTVPAGGVYVDGLGVGDVGDDVLLDRANMSQ
EGILIMTAVLHPTPHVEIVSRGFVRPNRDLDGQIRRVALDAVETGMREKKRLEDVRDDMY
GAVRRFVRKVTGRNPVLIPLIVD
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacccagccaaggacgcccaggccggagtggccaccgcgcccgcagcagccgaa
cagtttctcgaaatcattccgctcggcgggatgggcgagatcggtaaaaacatcaccgcc
taccgctttcaagacgagatcatggtcgtcgacggcggcttggcctttcccgatccacac
caactcggcgtggacttgattattccgcgcatcgattaccttcaacagcatgcggacctg
atcaagggctggattctgacccacggccacgaggaccacatcggcggcctgccctatatc
ctgccccgcctgccgcgtgtgccggtctacggcgcccccctcacgctggggctggtgcgc
gagaagctctcagagttcggcgtgcgggagagcgacgtggatctgcgcgaagtcgacctc
aacgccaagattcggattggccggcactttggggtcgaattcatccgcatgacccactcg
attcccgacaacgccgggtacatcctgaccaccccggtggggcgggtgctgcacaccggc
gacttcaagctggacgagcatcccagcgacggcaagctctccgatctgggccgcatcgaa
caggtggggcgcgaaggcgtgctgctcctgatcagcgactcgaccaacgccgagcgcccg
ggccgcaccatgagtgaggccgaagtggcgaagaacctggaggacgtgatcgcgcggtgc
cggggccgggtcttcatgaccacctttgcctccaacatccaccgcatcggaaacgtgatc
cagatcgcccaccggctgggccgccgggtggtgatggaaggccgctcgatgctgaagtat
gcgcaggtcgcgcagcagctcggctacatggatctccccgaaccgctgctgtccagcgag
gaagtgggtgacttgcaagacccccaggtgctctatgtctgcaccggctcgcagggccag
cccatgagcgtgctctcgcgcttggcgtttggtaaccatgccaagattgcgctgaagcgc
ggcgatagcgtgattctctccagcaacccgattcccggcaacgaggaggcggtgaatctc
gtcatcaaccgcctgtacgagatcggcgtggacgtgtactacccgcccacctaccgggtc
cacgcctcggggcacggttcgcaggaggaactcgccaccgtgctgaacctcgctcggccc
aagtacttcctgccctggcacggcgaaccgcgccaccagatcaaccacgcccgcctggcg
cagaccctcccgcgcccgccccgccgcacgctgatcgcccgcaacggtgacgtggtgcgc
ctcggccctgacgagttccgggtgacgggtacggtgcccgccgggggcgtgtatgtggat
gggctgggtgtgggcgatgtgggcgacgatgtgctgctcgaccgcgccaacatgagccag
gaaggcattctgatcatgaccgccgtgctgcaccccacgccgcacgtcgagatcgtctcg
cgtggctttgtgcggcccaaccgcgaccttgacggacagattcgccgggtggcactcgac
gcggtcgaaacagggatgcgggagaaaaaacggctggaagacgtgcgcgatgacatgtac
ggagccgtccgccgctttgttcgcaaggtaacgggcaggaatccggtgctgattcctttg
attgtggactga
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