Megalodesulfovibrio gigas: DGI_0981
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Entry
DGI_0981 CDS
T02851
Symbol
rtcB
Name
(GenBank) putative cytoplasmic protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dgg
Megalodesulfovibrio gigas
Brite
KEGG Orthology (KO) [BR:
dgg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dgg03016
]
DGI_0981 (rtcB)
Enzymes [BR:
dgg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DGI_0981 (rtcB)
Transfer RNA biogenesis [BR:
dgg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DGI_0981 (rtcB)
Prokaryotic type
tRNA splicing ligases
DGI_0981 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AGW12860
UniProt:
T2G8E5
LinkDB
All DBs
Position
complement(1045660..1046835)
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AA seq
391 aa
AA seq
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MRETPAPYAHFRCAESAEPHGDDAGAVDQMENALWLPMAIAGALMPDAHTGYGLPIGGVL
AVDNAVIPYAVGMDIACRMRLSVLDFPLARMREKRESLLAALETQTRFGVGGSFRPPLEH
PVLAEDWGFCRLLKEQRHKAAEQLGTSGSGNHFVEFGELHVLDTWGDLPAGRYSALLSHS
GSRGVGGAVAQHYSRLARTLLPGLPNRLRHLAWFELGSAEGREYWAAMELMGRYSEANHQ
LIHRRIVGALGLEVLATVENHHNFAWVETVAGRPAVVHRKGATPAHLGRLGVIPGSMTAP
GFVVRGKGNPASLCSAAHGAGRRMSRTEARKRANWHQMTRELEAHGVTLMGGGLDEAPCA
YKDIHAVMAAQAELVDVVGRFSPMLVKMDTF
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
ttgcgggagacgccggctccctatgcgcacttccgctgcgccgaatctgccgagccccat
ggagacgatgccggggccgtggaccagatggaaaacgccctctggctgcccatggccatc
gccggcgcgctcatgcccgacgcccacaccggctacggcctgcccattggcggcgtgctg
gccgtggacaatgccgtcatcccctatgccgtgggcatggacatcgcttgtcgcatgcgg
ctttcggtgctggattttccccttgcgcgcatgcgggaaaagcgcgagtctctccttgcc
gccctggagactcagacgcgattcggcgtggggggcagcttccggccgcccctggaacac
ccggtgcttgccgaggactggggcttctgccgtctgctcaaggagcagcggcacaaggcc
gcggaacagctgggcaccagcgggtcaggcaatcattttgtggagttcggcgaactgcac
gtgctggatacctggggcgatctgccggccggccggtactcggcgctgctctcccacagc
ggcagccgcggcgtgggcggtgcggtggcgcaacactattcccggctggccaggacgttg
ctgccagggctgcccaaccggctgcggcatctggcctggttcgagctgggcagcgccgag
ggccgcgaatactgggcagccatggagctgatgggccgctacagcgaggccaatcaccag
ctcatccaccgtcgcatcgtcggcgcgctggggctggaggtgctggccacggtggagaac
caccacaacttcgcctgggtggaaacggtggccggtcggccggccgtggtgcatcgcaag
ggggccacgccggcgcacctgggccggttgggggtgattccgggatccatgacggcgccg
ggatttgtggtccgcggcaagggcaatccggcgtcgctgtgctcggcggcccacggcgcc
ggccggcgcatgagccgcaccgaggcccggaagcgggcaaactggcaccagatgacgcgc
gagctggaggcccacggcgtcaccctgatgggtggcggcctggatgaagcgccctgcgcc
tataaggatattcatgccgtcatggcagcccaggccgaactggtggacgtggtgggccga
ttttctccaatgcttgtgaaaatggacacattctag
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