Megalodesulfovibrio gigas: DGI_1169
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Entry
DGI_1169 CDS
T02851
Name
(GenBank) putative DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dgg
Megalodesulfovibrio gigas
Pathway
dgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DGI_1169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgg03019
]
DGI_1169
Enzymes [BR:
dgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DGI_1169
Messenger RNA biogenesis [BR:
dgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DGI_1169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Shikimate_DH
Flavi_DEAD
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
AGW13030
UniProt:
T2G8V6
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All DBs
Position
1239438..1240754
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AA seq
438 aa
AA seq
DB search
MNFEAFALNAQIMAGVRDAGYATATPIQAQAIPVLLEGHDVIGLAQTGTGKTAAFVLPLL
QRMIASGARKEGPIRTLVLAPTRELAVQIQQDWTALGRHTGYRSAAVIGGVSQFGQVKAL
RRASVCVACPGRLLDLMDQRLADLSNVDALVLDEADTMLDMGFLPAIKAILAKLPTNRQT
LLFSATMPAQIRTLAEGMMTKPQMIKVSNTAPAASVSHTVYPVEDGLKLAVLETMLKQED
AESVIVFTRTKHRAKSLALKLGGKGLTVTSLQGNMSQNKRQEAMSGFKSGKYRVLVATDI
AARGIDCKSVSHVINFDPPDTAEAYTHRIGRTGRAERSGMAVTLMTSSDRRLMRDIERAL
GCCIERGVFPQCDCLVANAPRQDQGRLQTEDRRPEPRRAAADRSGDARRAGPRPGQPQRT
SRTGQDSRQPRRNDSAYA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
gtgaattttgaagcatttgcgcttaatgcgcaaatcatggctggcgtccgcgatgccggc
tacgccacggctacgcccatccaggcccaggccattcccgtcctgctcgaagggcacgac
gtcatcggtctggcccagaccggcaccggcaaaaccgccgccttcgtgctgccgctgttg
cagcgcatgatcgcttccggggccagaaaagaaggtcccatccgcaccctggtgctggcc
cccacccgggagctggcggtgcagattcaacaggactggacggccctgggccgccacacc
ggctaccgcagcgcggccgtcatcggcggcgtgagccagtttggccaggtgaaagccctg
cgccgggcctccgtgtgcgtggcctgccccggccggctgctggatctcatggatcagcgc
ctggcagatctctccaatgtggacgccctggtgctcgacgaagccgacaccatgctggac
atgggcttcctgccggccatcaaggccattctggccaagctgcccacgaatcgccagacg
ctgctgttctccgccaccatgccggcccagatccgcaccctggccgagggcatgatgacc
aagccgcagatgattaaggtctccaacactgcgcccgcagccagcgtgtcgcacacggtg
tatcccgtggaagacggcctcaagctggccgtgctggaaaccatgctcaagcaggaagac
gccgaaagcgtcatcgtcttcacccgcaccaagcaccgggccaagtccctggcgctcaag
ctgggtggcaagggcctgaccgtgacctcgctgcagggcaacatgtcccagaacaagcgc
caggaagccatgtccggcttcaagagcggcaagtaccgcgtcctggtggccacggacatc
gccgcccgcggcatcgactgcaagagcgtcagccacgtcatcaacttcgatccgccggac
actgcggaagcctacacgcaccgcatcggccgcaccggccgcgccgagcgctccggcatg
gccgtcaccctgatgacgagcagcgaccgccggctcatgcgcgacatcgaacgcgccctg
ggctgctgcatcgaacgcggagtcttcccgcagtgcgattgtctggtggccaacgccccc
cgccaggaccagggcagactccagacggaagaccgccggcccgagcctcgccgtgccgcg
gccgaccgcagcggtgacgcccgccgtgccgggccacgccccggccaaccccagcgcacc
agccgcactggccaggactcccgccagccgcgccggaacgattctgcctacgcctaa
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