Megalodesulfovibrio gigas: DGI_1552
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Entry
DGI_1552 CDS
T02851
Name
(GenBank) putative polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dgg
Megalodesulfovibrio gigas
Pathway
dgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DGI_1552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgg03019
]
DGI_1552
03016 Transfer RNA biogenesis [BR:
dgg03016
]
DGI_1552
Enzymes [BR:
dgg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DGI_1552
Messenger RNA biogenesis [BR:
dgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DGI_1552
Transfer RNA biogenesis [BR:
dgg03016
]
Prokaryotic type
tRNA degradation factors
DGI_1552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
AGW13392
UniProt:
T2GBU4
LinkDB
All DBs
Position
complement(1674139..1676433)
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AA seq
764 aa
AA seq
DB search
MQSAFNPLRLTTTVADVPYILETGRLANQADGAVWLQCGGTVVLVTTVTQTTERDMGFFP
LVVDYQEKMYAAGRVPGSFFRREIGRPSERETLCSRLIDRPIRPLFPKGFKDEVQVIATV
LSADQENDPDVLAITAASAALHMSRVPFLGPIAGARIGYVNGEFVFNPTSEVLAQSSLNL
VMAASREAVVMVEGAASFIPQDVIASALQWGHEKLQPLLDLQEQLREKVGVEKMAFNPPV
EDAELKEAIEGLAMAGLSEALYVPEKMARKKAKSAVKELVHKALAEDARFAETPDRLKRT
NEFLAALEKRIVRQRIKNEGVRIDGRNTSTVREIKTDIALLPRTHGSALFARGETKVLCV
ATLGSSRDEQRVEGLMGDGAKRFMLHYNFPPYSVGEVKMLRVSRREIGHGALAERALTPV
LPSAEDFPFTMRVVGEVMESNGSSSMATVCAGSLALMDAGVPISAAVAGIAMGLIKEGDD
YFVLTDILGDEDALGDMDFKIAGTREGVTAFQMDIKIAGIPPEVMAKALAQATDARLHIL
GEMDKILAAPRPQLSEFAPQLEVVQVNPDIIRMIIGPGGKNIKAITADTGAAIDIEDSGK
VSIFAPTLEALQKAKERVMHFDQRPEVGTIYEGPVRKILEIGAIVEILPGVEGLVHISQL
ALERIDKVTDVVKLGDTLKVKCLELLDGGKMRLSRAAVLAEEQGVEFKDSPPRSGRPPRR
EGDRNDRPRGDRGGRGDRNDRPRGNREGGGSRGGSGGGFTGFDE
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtgctttcaatcccttgcgcctcaccaccaccgttgccgacgtcccctacatc
ctggaaaccggccgcctggccaaccaggccgatggcgccgtgtggctgcagtgcggcggc
accgtggtactggtgaccaccgtcacccagaccacagaacgcgacatgggcttcttcccc
ctggtggtggactaccaggaaaagatgtatgccgccggccgcgtgcccggcagcttcttc
cgccgcgaaatcggccgccccagcgaacgcgaaaccctctgctcccggctcatcgaccgc
cccatccgcccgctcttccccaagggcttcaaggatgaagtgcaggtcatcgccacggtg
ctgtccgcggatcaggaaaacgatcccgacgtgctggccatcaccgccgcctctgccgcc
ctgcacatgagccgcgtgcccttcctggggcccatcgccggcgcacgcatcggctacgtg
aacggcgagttcgtcttcaaccccaccagcgaagtgctggcccagtccagcctgaatctg
gtcatggctgcctcccgcgaggccgtggtcatggtggaaggcgcagcgtccttcatcccg
caggatgtcatcgccagcgccctgcagtggggccatgaaaagctgcagcccctgctggat
ctgcaggagcagctgcgcgaaaaggtcggcgtggaaaagatggccttcaacccgccggtg
gaagatgcggagctgaaggaagccattgaaggattggccatggccggcctgtccgaagcc
ctgtacgtgccggagaagatggcccgcaagaaggccaagtccgccgtcaaggagctggtg
cacaaggccctggccgaggacgcccgctttgccgagacccccgatcggctcaagcgcacc
aacgagttcctcgctgccctggaaaagcgcatcgtccgccagcgcatcaagaacgaaggc
gtgcgcatcgacggccgcaacacctccacggtgcgcgaaatcaagaccgatatcgccctg
ctgccccgcacgcatgggtccgccctctttgcccgcggcgaaaccaaggtgctctgcgtg
gccaccctgggctccagccgcgacgaacagcgcgtggaaggcctgatgggcgacggcgcc
aagcgcttcatgctgcattacaacttccccccctattccgtgggcgaagtgaagatgctg
cgcgtctcccgccgggaaatcggccacggcgccctggccgaacgcgcccttacccctgtg
ctgccctcggcggaagacttccccttcaccatgcgcgtggtgggcgaagtgatggagtcc
aacggctcctcctccatggccacggtctgcgccggttccctggcgctcatggacgccggc
gtgcccatctccgccgcggtggctggcatcgccatgggcctgatcaaggaaggggacgac
tacttcgtcctcaccgacatcctgggtgatgaagacgccctgggcgacatggacttcaag
atcgccggcacccgcgaaggcgtgaccgcgttccagatggacatcaagatcgccggcatt
ccccccgaagtgatggccaaggccctggcccaggccacggacgcccgcctgcacatcctg
ggcgagatggacaagatcctcgccgcgccgcgcccccagctctccgagttcgcgccgcag
ctggaagtggtgcaggtgaacccggacatcatccgcatgatcatcggccccggcggcaag
aacatcaaggccatcaccgcggacaccggcgcagccatcgacatcgaagactcgggcaag
gtctccatcttcgcccccaccctggaggccctgcagaaggccaaggaacgggtgatgcac
ttcgaccagcggccggaagtgggcacgatctacgaaggtccggtgcgcaagatcctggaa
atcggcgccattgtggaaattctgcccggcgtcgaaggcctggtgcacatctcgcagctg
gccctggaacgcatcgacaaggtgacggacgtggtcaagctgggggacaccctcaaggtc
aagtgcctggaactgctggatggcggcaagatgcgcctctcccgcgctgcggtgctggcc
gaggaacagggcgttgagttcaaggattccccgccgcgttccggccggcctccgcgccgt
gaaggcgaccgcaacgaccgcccccgtggcgaccgtggcggccgcggtgatcgcaacgac
cgtccccgcggcaaccgcgaaggtggcggcagccgtggcggcagcggcggcggcttcacc
ggcttcgacgaatag
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