Megalodesulfovibrio gigas: DGI_1779
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Entry
DGI_1779 CDS
T02851
Name
(GenBank) putative DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dgg
Megalodesulfovibrio gigas
Pathway
dgg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dgg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DGI_1779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dgg03021
]
DGI_1779
03400 DNA repair and recombination proteins [BR:
dgg03400
]
DGI_1779
Enzymes [BR:
dgg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DGI_1779
Transcription machinery [BR:
dgg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DGI_1779
DNA repair and recombination proteins [BR:
dgg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DGI_1779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
BSH_YknX
BSH_RND
HgmA_N
Motif
Other DBs
NCBI-ProteinID:
AGW13579
UniProt:
T2GBQ2
LinkDB
All DBs
Position
1893197..1897351
Genome browser
AA seq
1384 aa
AA seq
DB search
MSLDDLFSFRGAANQAVTSHTLKAIKISIASPEKIREWSFGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMADLEKVLYFDSYVVLDAGGTTLQKYQVITEEQYMQVLDHYGED
AVKVGMGAEAVRSLLEELDLETLRVELREDSQTTRSQTKKKKLTKRLKIIEAFLESGNRP
EWMILEVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELGAPDIIIRN
EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKLHQCGLPKKMALELFKPFIYAKLEERELASTIKSAKRMVEREELVVWDILEE
VVREYPILLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV
EANIECRVLMMSTNNILSPANGSPVIVPSQDIVLGLYYLTVERSFQRGEGKIFTAPWEVI
AAYDANTVDLHARIKCRIDGELLDTTPGRVILGQVVPEQVPFEMVNQILTKKNIARLVGE
TYRRAGTKATVILCDRLKDTGYEFATRAGVTIGVKDLQIPSKKPKLLEDARNEVDQIEQQ
YREGIITKTEKYNKVVDVWTKVTNAVSKEMMDEISQDFITDPKTGRVEANISFNPIYMMS
HSGSRGNADQMRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADT
ALKTANSGYLTRRLVDVVQDVIIGEVDCGTVDGLEIGHLVKGGDIKVRLSERILGRSLLF
PIFDPDTLEEMLPANTLVNEELALMIEDRGISSVMVRSTLTCQSRHGVCAHCYGRDLARG
DLVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREVERSSIQAQHAGTVAMSRVKMV
KNVEGKFLVLGKSGQISIVDEQGREREKYVLPTGAKLHVQAGDQIRKGQVLAEWDPFNEP
FVTDVDGVVKFTDIIDGKTFQEKTDEITKMATQTIIEYRSTNFKPSISVCDASGSPRPRP
DSAIPAVFTLPVGAILMVRDGMEVRAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPK
DLAVVSEIDGIVTHGTESKGKRRLVVTPEAGELKEYLIPKGKHITVQDGDFVEAGELLTE
GYPELHDILKIKGEKFLANYLVEEIQDVYRFQGVNINDKHIEVIVRQMLKKISILDPGDT
TFLLGEQVDKHRFMEENNRAIMEGKRAAQGEPLVLGITQASLTTDSFISAASFQETTKVL
TEASLLAKEDPLRGLKENVIVGRLIPAGTGYRKYVDAEIAVPDQPERPDKFLEELEDNPL
LIDG
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggacgatttgttctccttccgcggcgccgccaatcaggcggtcaccagccat
accctgaaggccatcaagatctccatcgcctcgccggagaagatccgggaatggagcttc
ggggaagtcaagaagccggagaccatcaactaccgcaccttcaagccggagcgcgatggc
ctgttctgcgccaagatcttcggcccggtgaaggattacgagtgcaactgcggcaagtac
aagcgcatgaagcaccgcggcattgtctgcgaaaagtgcggcgtggaagtcattgcgtcc
aaggttcgtcgcgaacgcatgggccacatcgagctggccgcgcccgtggcgcacatctgg
ttcctcaagaccctgccgtccaaaatcggcacgctcctggacatgaccatggcggacctg
gaaaaggtcctctactttgattcctatgtggtgctggacgccggtggcaccacgctgcag
aagtatcaggtcatcacggaagagcagtacatgcaggtgctggaccactacggcgaggac
gccgtgaaggtgggcatgggcgcggaagccgtgcgctccctgctcgaagagctggacctg
gaaaccctgcgcgtggaactgcgcgaggacagccagaccacccgctcccagaccaagaag
aaaaagctcaccaagcggctcaagatcattgaagccttcctggaaagcggcaaccggccc
gagtggatgattctggaagtcatcccggtcattccgcccgagctgcgccccctggtgccc
ctggacggcggccgcttcgccacctcggacctgaacgacctctaccgccgggtgatcaac
cggaacaaccgcctcaagcggctcatcgagcttggcgcgccggacatcatcatccgcaac
gaaaagcgcatgctgcaggaagcggtggacgcgctctttgacaacggtcgccgcggtcgg
gccatcaccggcaccaacggccggcccctgaagtctctctcggacatgatcaagggcaag
cagggccggttccgccagaacctgctgggcaagcgcgtggattactccggccgttccgtc
atcgtggtgggccccaagctcaagctgcaccagtgcggcctgcccaagaagatggccctg
gagctgttcaagcccttcatctatgccaagctggaagaaagagagctggcctccaccatc
aaatccgccaagcggatggtggaacgcgaagagctggtggtgtgggacatcctggaagaa
gtggtgcgggagtatcccatcctgctcaaccgcgcgcccacgctgcaccgtctgggcatt
caggcctttgaacccaccctggtggaaggcaaggccatccagctgcacccgctggtctgc
tccgcctacaacgccgactttgacggcgaccagatggccgtgcacgtgcccctttccgtg
gaggcgaacatcgaatgccgcgtgctcatgatgagcaccaacaacattctgtcgcccgcc
aacggctcgccggtcatcgtgccgtcgcaggatatcgtgctcgggctgtactacctcacc
gtggagcgcagcttccagcgtggggaaggcaagatcttcaccgcgccgtgggaagtcatt
gccgcgtacgacgccaacaccgtggatctgcacgcccgcatcaagtgccgcatcgatggc
gaactgctggacaccacgcccggccgcgtcatcctggggcaggtggtgcccgagcaggtg
ccttttgaaatggtgaaccagatcctcaccaaaaagaacatcgcccgtctggtgggcgag
acctaccgccgcgccggcaccaaggccacggtcatcctgtgcgaccgcctcaaggatacc
ggctacgagttcgccacccgcgccggcgtgaccattggcgtgaaggatctgcaaatccct
tccaagaagcccaaactcctggaagacgcccgcaacgaagtggaccagatcgagcagcag
taccgcgaaggtatcatcaccaagacagagaagtacaacaaggtggtggacgtctggacc
aaggtcaccaacgccgtctccaaggagatgatggacgagatcagccaggacttcatcact
gatcccaaaaccggcagggtggaagccaacatcagctttaaccccatctacatgatgagc
cactccggctcccgaggcaacgcagaccagatgcgccagctcgccggcatgcgcggcctg
atggccaagccttccggcgaaatcatcgaaacgcccatcacctcctccttccgcgagggg
ctctcggtgctgcagtacttcacctccacccacggcgcacgaaagggcctggccgacacg
gccctcaagaccgccaactccgggtacctcacccgtcgtctggtggacgtggtgcaggac
gtgatcatcggggaagtcgattgcggcactgtggacggcctggaaatcgggcatctggtc
aagggcggggacatcaaggttcgcctgtccgagcgtatcctcggccgctcgctcctgttc
cccatcttcgatccggacaccctggaagaaatgctgccggccaacacgctcgtcaatgaa
gagctggccctgatgatcgaagaccgcggcatctcctcggtcatggtgcgctccacgctc
acctgccagagccgccacggcgtgtgcgcccattgctacggccgcgacctggcccggggc
gatttggtgaacatcggcgaaaccgtgggcatcatcgccgcgcagtccatcggcgaaccc
ggcacccagctgaccatgcgtaccttccacatcggcggtacggcctcgcgtgaagtcgag
cgctcctccatccaggcgcagcacgccggcacggtggccatgtcccgcgtgaagatggtc
aagaacgtcgagggcaagttcctggtgctcggcaagagcgggcagatcagcatcgtggac
gagcagggccgcgagcgtgaaaagtacgtcctgcccacgggcgccaagctgcacgtgcag
gccggcgaccagatccgcaaggggcaggtcctggccgagtgggaccccttcaacgagccc
ttcgtcaccgacgtggacggcgtggtcaagttcacggacatcatcgacggcaagaccttc
caggaaaagaccgacgaaatcaccaagatggccacccagaccatcatcgaataccggtcc
accaacttcaaaccctccatctccgtgtgcgatgcctcgggctcgccgcggccgcggccg
gattcggccatcccggccgtgttcaccctgcccgtgggcgccatcctcatggtgcgcgac
ggcatggaagtgagagccggggacatcatcgcccgtaagccccgcgaaacctccaagacc
aaggacatcgtgggcggtcttccccgcgtggccgagctctttgaagtccgcaagcccaag
gacctcgccgtggtgtcggaaatcgacggcatcgtcacccacggcacggaatccaagggc
aagcgccgtctggtggtcacccccgaagccggcgagctcaaggaatacctcatccccaag
ggcaagcacatcaccgtccaggacggcgacttcgtggaagccggcgaactgctgaccgaa
ggctacccggaactgcacgacatcctgaagatcaagggcgaaaagttcctggccaactac
ctggtggaagaaatccaggacgtgtaccgcttccagggcgtgaatatcaacgacaagcac
atcgaggtcattgtccggcagatgctgaagaaaatcagcatcctcgatccgggcgacacc
accttcctcctgggcgagcaggtggacaagcatcgcttcatggaagaaaacaaccgcgcc
atcatggaaggcaagcgcgctgcccagggtgaaccgctggtgctgggcatcacccaggca
tccctcaccacggacagcttcatctctgccgcctccttccaggaaaccaccaaggtgctc
accgaggcctctctgctggccaaggaagatcccctgcgcggcctgaaggaaaacgtcatc
gtcggccggctcatcccggcgggcacgggctaccgcaaatacgtggatgcggaaatcgcc
gtgccggaccagcccgaacggcccgacaagttcctggaagagctggaggacaacccgctg
ctcatcgacgggtag
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integrated database retrieval system
