Megalodesulfovibrio gigas: DGI_2171
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Entry
DGI_2171 CDS
T02851
Name
(GenBank) putative excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
dgg
Megalodesulfovibrio gigas
Pathway
dgg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dgg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DGI_2171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dgg03400
]
DGI_2171
DNA repair and recombination proteins [BR:
dgg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DGI_2171
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DGI_2171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
AAA_16
UvrA_DNA-bind
SMC_N
AAA_29
nSTAND1
AAA_23
AAA_25
AAA_33
RsgA_GTPase
AAA_22
AAA_18
AAA_21
nSTAND3
NACHT
DnaJ_CXXCXGXG
RNA_helicase
Rad17
Anti-TRAP
ATPase_2
PhoH
Motif
Other DBs
NCBI-ProteinID:
AGW13930
UniProt:
T2GBG4
LinkDB
All DBs
Position
complement(2268097..2270928)
Genome browser
AA seq
943 aa
AA seq
DB search
MASGRGQRVIRIEGARQHNLKNLTLDIPRDELVVICGPSGSGKSTLAFDIVYAEGQRRYV
ESLSAYARQFLPQMDKPDVDKIEGLSPAISLEQQSASRNPRSTVATTTEMYDFLRVFYAR
LGVPHCPKCGRPIQAQSTDQIVDEFLALPEGTRFMILAPLVEHQKGTQQDKLKKLKSQGF
ARVRLDGKILSLDEIPAVEKNKKHSLDLVVDRLVSRPDNNAELRGRLADSVELALDMGKG
RVILHLPDAEGSVADRVLATDSACPDCRIAIPAPSPQLFSFNSPQGACPTCSGIGSVEYF
EPRLLAPNRGLSLAGGGLLPWKSPRVFARYEDALARLGKAHGFTLTTPFDQYNEEAWSAL
FNGDEAQDWQGVVSILEGGMDFGSIWRDELSRFRQSMPCPSCQGARLKPEALAVRVDDLN
IFQFCSLSIVRALEWLEGRVFPGHTARIAEPLMKELTHRLGFLANVGLEYIALARNMSTL
SGGEAQRIRLAGQLGSGLVGVTYVLDEPSIGLHPRDNVRLLNTLRSLQTRGNTVLVVEHD
EATILAADHVIELGPGSGMQGGEIVHAGPVHGNGGLMQSQSSLTAKYLRGDLQIPRPSAR
RPANGSLVVRNARTNNLQGVDCRIPLASLVCVTGVSGSGKSSLVVDSLYKHLALSQGLKV
EQPGLIDGLEGAEAVERIVAIDQTPIGRTPRSNPATYTKIFDEIRTIFAQTPDAKKRGYQ
PGRFSFNVRGGRCEKCQGDGTITVEMHFLPDVYVTCEVCKGRRYNRETLDVHYKGKNIAD
VLDMSVREARLFFQNYPALKRRLAVLEEVGLEYMRLGQPATTLSGGEAQRIKISRELGKR
SLPKTLYILDEPTTGLHMHEVGKLIKVLHSLVDKGASVVVIEHNIDVILAADWVLDLGPG
GGESGGRIVSQGTPEQIIADPNSVTGAFLTHTVPADRELPPAG
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgggcgcggtcagcgcgtcatccggatagaaggggcgcggcagcacaacctg
aagaacctcacgctggacatcccgcgcgacgagctggtggtcatctgcggcccctcgggc
tcgggcaagtccaccctggcctttgacatcgtctacgccgaaggccagcgccgctatgtg
gagagcctctcggcctatgcccggcagttcctgccccagatggacaagcccgacgtggac
aagatcgagggcctctccccggccatctccctggagcagcagagcgccagccgcaacccg
cgctccaccgtggccaccaccacggaaatgtacgactttctccgggtgttctatgcccgc
ttaggcgtgccccactgccccaaatgcggccggcccatccaggcccagagcacggatcag
atcgtggatgagttcctggccctgcccgagggcacacggttcatgatcctggctcccctc
gtcgaacaccagaagggcacccagcaggacaagctcaagaagctcaagtcccagggcttt
gcccgcgtgcggctggacggaaagatcctgtcgttggacgagatcccggccgtggaaaag
aacaagaagcacagcctggatctggtggtggaccggctggtgagccggccggacaacaac
gccgagctgcgcggccggctggcggattccgtggaactggccctggacatgggcaagggc
cgggtgattctgcacctgcccgatgccgaaggcagcgtggcggaccgcgtcctggccacg
gattcggcctgcccggactgccgcatcgccatcccggccccctccccccagcttttttcc
ttcaactccccccagggcgcctgtcccacctgctcgggcatcggcagcgtggaatatttc
gaaccgcggcttctggctcccaaccggggcctgtccctggctgggggcggcctcctgccc
tggaagagcccgcgggtgttcgccaggtacgaagacgccctggcccggctgggcaaggcc
cacggcttcaccctcaccacgccctttgaccaatacaacgaggaagcctggagcgcgctc
ttcaacggcgacgaagcccaggactggcagggcgtggtcagtatcctggaaggcggcatg
gatttcggcagcatctggcgggacgagctctcccgcttccggcagtccatgccctgcccc
agctgccagggggcgcgcctcaagcccgaggccctggccgtgcgggtggatgacctgaac
atcttccagttctgttccctgtccattgtccgggccctggaatggctggaaggacgggtg
ttccccgggcatacggcgcgcatcgccgagcccttgatgaaggaactgacgcaccgcctg
ggctttctggccaatgtgggcctggagtacatcgccctggcgcgcaacatgtccaccctg
tccggcggggaggcccagcgcatccgcctggccgggcagctcggatccggtctggtgggc
gtgacgtacgtgctggacgagccttccatcggcctgcatccgcgggacaacgtccgcctg
ctgaacaccctgcgcagcctgcagacccgtggcaacaccgtgctggtggtggaacacgac
gaagccaccatcctggcggcggatcacgtgatcgaactcgggccgggctcaggcatgcag
ggcggggagattgtccacgccggccccgtgcatgggaacggcggcctgatgcagagccaa
tcctccctcacggccaagtacctgcgcggcgatctgcagattccccggcccagcgcccgc
cgtccggccaacggcagtctggtggtcagaaacgcccgcaccaacaacctgcagggcgtg
gactgccgcattcccctggccagcctggtctgcgtcaccggggtatccggttccggcaaa
agctcgctggtggtggactcgctgtacaagcatctggcgctttcgcaggggctcaaggtg
gaacagcccggactcatcgacgggctggaaggcgcagaggccgtggagcgcatcgtggcc
atcgaccagacccccatcggccgcacgccgcggtccaatccggccacctacaccaaaatc
ttcgacgagattcgcaccatctttgcccagacgccggacgccaaaaagcgcggctatcag
ccgggccgcttcagcttcaacgtgcgcggcggccgctgcgaaaaatgccagggcgatggc
accatcaccgtggagatgcactttctgcccgatgtgtacgtcacctgcgaagtgtgcaag
ggccggcgctacaaccgcgaaaccctggacgtgcactacaagggcaaaaacatcgccgac
gtgctggacatgagcgtgcgcgaagcgcgcctctttttccagaattatcccgccctgaaa
cgccgcctggccgtgctggaggaagtgggcctggaatacatgcgcctgggccagccggcc
accaccctgtctggcggggaggcccagcgcatcaagatcagccgtgagctgggcaaacga
agtctgccaaagaccttatacatccttgacgaacccaccacgggcctgcacatgcatgag
gtgggcaagctcatcaaggtgctgcacagtctggtggacaagggggccagcgtggtggtc
atcgaacacaacatcgacgtcatcctggcggcggattgggtgctggatctcggccccggc
ggcggcgaatccggggggcgcatcgtcagccagggcacgccggaacagatcatcgccgat
ccgaattccgtcaccggcgcgtttctcacccataccgtgccggcagaccgggaactcccg
cccgcaggctga
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