Megalodesulfovibrio gigas: DGI_2507
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Entry
DGI_2507 CDS
T02851
Symbol
rpoD
Name
(GenBank) putative RNA polymerase sigma-70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
dgg
Megalodesulfovibrio gigas
Pathway
dgg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dgg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DGI_2507 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dgg03021
]
DGI_2507 (rpoD)
Transcription machinery [BR:
dgg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DGI_2507 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
IL17R_fnIII_D2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
AGW14245
UniProt:
T2GCE3
LinkDB
All DBs
Position
complement(2627998..2629764)
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AA seq
588 aa
AA seq
DB search
MANNLKDIQQIKTLIAKGKVNGFLTFEEVSKALPSEINNPEQIEEIIGIFDQLDIAIVDS
EKDGKKMDLAPQESDDEAGQLSLTEDEDGADYSSRSTDPVRMYLREMGAVPLLDREGEVH
IAKKIENGELEVLFALVEVPVAIEEIITVGEDLKLNRMKLKDVVKTIEEDDPSEDEMNQR
TRVIMLLEEIKTCFKKKRKIYSKLDECARTDRRVTAVQKEIVCYKEEVVTRLRDIKLEKT
LIDRIIETVGDYVRQMHNCQRDLSAYILSVGKTQVEIQELFRKLDAREINPVAAADELGM
TVEEIFSFKEMISGKIEILHRLQSKCCHNVQDLEEVLWRIRKGSLIAQRAKQELIRANLR
LVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIAD
QARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYPLEKVKKVLKIAKEPI
SLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNTKLGEQIASVLADLTPREEQVLRKRFGI
GEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQVLRSYYEN
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaatctcaaagatatccagcagatcaagaccctcatcgccaagggcaaggtc
aatggctttctcaccttcgaggaagtcagcaaggccttgccgtcggagatcaacaatccc
gaacagattgaagaaatcatcggcatctttgaccagctggacatcgcaatcgtcgattca
gagaaagacggcaaaaagatggacctggccccccaggaatccgacgacgaagccggccag
ctttctttgaccgaagatgaagacggtgcggattactcctcccgttccacagaccccgtg
cgcatgtacctgcgggaaatgggcgccgtgcccctgctggaccgcgaaggcgaagtacac
attgccaagaaaattgagaacggcgagctggaagtcctctttgccctggttgaagtgccc
gtggccattgaggaaattatcaccgtgggcgaggacctgaagctcaaccgcatgaagctg
aaggacgtggtcaagaccatcgaggaagacgaccccagcgaagacgagatgaaccagcgc
acgcgggtcatcatgctgctggaggaaatcaagacgtgcttcaagaagaagagaaagatt
tacagcaagctggatgaatgcgcccgcacggatcgccgtgtgacggccgtgcagaaggaa
atcgtctgctacaaggaagaagtggtcacccggctcagggacatcaagctggaaaaaacc
ctcatcgaccgcatcatcgagaccgtgggcgactatgtgcggcagatgcacaactgccag
cgcgatctttccgcatacatcctgtccgtgggcaagacgcaggtggaaatccaggaactg
ttccggaagctggacgcgcgggaaatcaaccccgtggcggcagcggatgaactgggcatg
accgtggaggagatcttctccttcaaggaaatgatatccgggaagatcgaaatcctgcat
cgcctgcagtccaagtgctgccacaacgtgcaggatctggaagaagtgctgtggcgcatc
cgcaaggggtccctcattgcccaacgggccaagcaggagctcatccgcgccaacctgcgg
ctggtggtctccattgccaaaaaatacaccaatcgcggcctgcagttcctggatctcatc
caggaaggcaacatcggcctcatgaaagcggtggacaagttcgagtaccagcgcgggtac
aagttctccacgtatgccacgtggtggattcgtcaggccatcacccgggccattgcggac
caggcgcgcaccatccgcattcccgtgcacatgatcgagaccatcaacaagctcatccgc
acctcgcgctatctcgtccaggagctgggccgcgacccgaccccggaagaaatcgccgaa
cgcatggattatccgctggaaaaggtgaagaaggtcctcaaaatcgccaaggagcccatt
tccctggaaacccccatcggcgacgaagaggattccagcctgggcgacttcatcgaggac
aagaaagccgtggccccggcggaagaggtggtcaacaccaagctgggcgagcagattgcc
agtgtgctggccgacctgaccccccgcgaggagcaggtgctgcgcaagcgcttcggcatc
ggcgaaaagagcgaccacaccctggaagaggtgggcaagcttttcaacgtcacccgcgag
cgcatccggcagattgaggccaaggccctgcgcaagctgcggcatcccgtgcgcagccag
gtgctgcgttcgtattacgagaattga
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