Megalodesulfovibrio gigas: DGI_2548
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Entry
DGI_2548 CDS
T02851
Symbol
rnr
Name
(GenBank) putative ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dgg
Megalodesulfovibrio gigas
Pathway
dgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DGI_2548 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgg03019
]
DGI_2548 (rnr)
03016 Transfer RNA biogenesis [BR:
dgg03016
]
DGI_2548 (rnr)
Enzymes [BR:
dgg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DGI_2548 (rnr)
Messenger RNA biogenesis [BR:
dgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DGI_2548 (rnr)
Transfer RNA biogenesis [BR:
dgg03016
]
Prokaryotic type
tRNA degradation factors
DGI_2548 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_RNR_1st
DUF4777
PBP2
Motif
Other DBs
NCBI-ProteinID:
AGW14281
UniProt:
T2GDT2
LinkDB
All DBs
Position
complement(2661085..2663304)
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AA seq
739 aa
AA seq
DB search
MAKKKRRGERPQSVDLPTVLRVFKESRKPLSQGEIVSMLKLSGKEVHRLRPLIEQLLDGG
KLIKLGRGSYGLTERLKLITGKLEIQRSGVGFVIPEDKRRTDIFVSPQHFNGAWHGDRVA
VALLPESHGRRPEGRIARVLERGATQLAVRVQRRMGELLLCRPTDPKRGFHLMVKADELV
QTLGQDVFDGDILIVEAGEQLDRDLYSATAVSRLGPEGDVGVQESLVKTNYDIPTAFPQP
VLDQAATLPEAPDEADMAGREDLRHLDLVTIDGVKARDFDDAVCVQREGEGYRLWVAIAD
VSHYVHPGTPLDEEALTRANSYYFPQSVCPMFPEALSNGLCSLNPHVDRLCMVVETAFDR
HGRYGESRLYPAVMRSKARLTYGQVQRAVLLKEEEERLAIAPVLPMLEVAEELARKINTL
RRQRGSLDFDLPEPEILFNLSGETTDIRRRTRHFGHQIIEEFMIAANEAVARFLTEREFP
CLYRIHPEPDPGKLAALFKLLQSTSLGPKLDPEQTRTPTAEGVQHLLALAQGTEQEFLVN
RLTLRAMMQASYDPQNEGHFGLASDCYCHFTSPIRRYADLVVHRSVKTALQAATWEHPFH
SFKKLKQVAEHLSATERVAMEAEREILKRLTVLFLQDKVGAEFTGVVNGMADFGFWVELN
EVMAEGLVRLSTLNDDYYAYLPDKQVLLGERTGRAIRLGQEVTVVLTDVQIGRLEVNLEL
ATPVERTVPGRRARQKRRE
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaaaaaacggcgcggcgagcgcccccagagcgtagatctgcccacggtactg
cgcgtgttcaaagaaagccgcaagcccctgagccagggagagattgtctccatgctcaag
ctttccggcaaggaagtccatcgtctgcggccgctcatcgagcagctgttggacgggggc
aaactgatcaagctcggtcgcgggtcgtacggccttaccgagcggctcaagctcatcacc
ggcaagctggagatccagcggtcaggggtgggttttgtcattccggaagacaagcggcgg
acggatatcttcgtcagcccgcagcatttcaacggcgcctggcacggggatcgcgtggcc
gtggcgcttttgccggaatcccacggccggcggccggaagggcgcattgcccgggtgctg
gagcgcggggccacgcagctggcggtgcgcgtgcagcgtcgcatgggcgagctgctgttg
tgccggcccacagaccccaagcggggcttccatctgatggtcaaggccgacgaactggtg
cagaccctggggcaggacgtctttgacggcgacatcctcattgtcgaggccggggagcag
ctggaccgcgacctgtacagcgccacggccgtgtcccgcctgggaccggagggcgatgtg
ggcgtgcaggagagtctggtcaagaccaactacgacatccccaccgccttcccccagccc
gtgctggaccaggccgccaccctgcccgaggcgccggacgaagccgacatggccggccgc
gaagacttgcggcatctggatctggtgaccatcgacggcgtcaaggcccgggatttcgat
gacgccgtgtgcgtgcagcgcgagggcgaggggtatcgtctctgggtggccatcgccgat
gtctcccattacgtccaccccggcacgcccctggacgaagaagccctgacccgcgccaat
tcgtactattttccgcagtccgtctgtcccatgttcccggaggcgctctccaacgggctg
tgcagccttaatccccacgtggaccggctgtgcatggtggtggagacggccttcgaccgc
cacggccggtacggggaatcccggctgtatccggccgtgatgcgcagcaaggcccggctg
acctacggccaggtgcagcgcgccgtgctgctcaaggaagaagaggagcggctcgccatt
gctccggtgctgcccatgctggaggtggccgaggagttggcccgcaagatcaataccctg
cgccgccagcgcggcagcctggactttgacctgccggagccggaaatcctgttcaacctg
agcggcgaaaccacggacatccgccgccgcacgcggcacttcgggcatcagatcatcgag
gaattcatgatcgcggccaacgaggccgtggcgcggtttcttacggagcgggagttcccc
tgcctgtaccgcatccatcccgagccggacccgggcaagctggcggcgctgttcaagctg
ctgcagtccacgtcccttggtccgaagctggatccggagcagacccgtacccccaccgcc
gaaggcgtgcagcacctgctggccctggcccagggcacggagcaggagttcctggtgaac
cgcctgaccttgcgggccatgatgcaggcgtcctacgatccgcaaaacgaagggcatttc
ggcctggcttcggactgctattgccacttcacctcgcccatccgccggtatgcggatttg
gtggtgcaccgcagcgtcaagaccgccctgcaggcggccacctgggagcacccgttccac
tccttcaaaaagctcaagcaggtggcggagcatctctcagccacggagcgggtggccatg
gaggccgagcgggaaatcctcaagcgcctgaccgtgctgttcctgcaggacaaggtgggt
gccgagttcactggcgtggtcaacggcatggccgacttcggcttctgggtggagctcaac
gaggtgatggccgaagggctggtccgcctctccaccctgaacgacgactactacgcctat
ctgccggacaagcaggtgctgctgggcgaacgcaccggccgggccatccgcctgggccag
gaagtgaccgtggtgctgaccgacgtgcagattggccgtctggaagtgaatctggaactg
gccaccccggtggaacgcaccgtgcccggccgccgagcgcgacagaagcgccgggaatag
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