Megalodesulfovibrio gigas: DGI_2879
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Entry
DGI_2879 CDS
T02851
Name
(GenBank) putative ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dgg
Megalodesulfovibrio gigas
Pathway
dgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DGI_2879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgg03019
]
DGI_2879
03009 Ribosome biogenesis [BR:
dgg03009
]
DGI_2879
Enzymes [BR:
dgg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DGI_2879
Messenger RNA biogenesis [BR:
dgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DGI_2879
Ribosome biogenesis [BR:
dgg03009
]
Prokaryotic type
rRNA processing factors
DGI_2879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGW14606
UniProt:
T2GER8
LinkDB
All DBs
Position
3024934..3026400
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AA seq
488 aa
AA seq
DB search
MTRTTKKKSKMFLSVLPGEQVEMALSEDGKLQEYYVEMLHQAKTKGNIYKGVIHNIDTSL
QAAFVNYGAVKNGFLQIDEVHPEYYLTPVDSSKGHKYPLLQKVLKPGQEILVQIGKEPTG
TKGAFLTTYLSIAGRHLVLTPGREQIGVSRKVEDEEERARLKEIMNGITPGEGLGVIVRT
VSEGLSKTNLTKDLQILERQWKEIRKRGQEAESPSLIYQEPDLAERAVRDYFTADVGEIW
VDDATTAERVAAYAAILFPRSKSLVKHHDATDRTLWERFNLQKQIDQLYSRYVTLPSGGQ
LVFDQAEALMAIDINSGRTGGKSNFHETAFRTNMEAAETIPHQLRLRDVGGQIVIDFIEM
KDRKQWAEVEKTLKAAMKVDRARHDIGKLNKFGLLQMVRQRLGSSAISLSSEACPACQGT
GFRRNMEWQSMQALKQIYFQLRANTGQAQLEIPLPPELCLYLLNRKKEKLLAMEQQYGTQ
LTLTMRHG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgactcgcaccaccaagaaaaaaagcaagatgttcctcagcgtgctgcctggcgaacag
gtggaaatggccttgtccgaagacggcaagctccaggaatactatgtggagatgttgcac
caggccaagaccaaaggcaacatctacaagggcgtcatccacaacatcgatacgtccctc
caggctgcctttgtcaactacggcgccgtcaagaacggctttctgcagattgacgaagtg
catcccgaatactacctcacccccgtggattcctccaagggccacaaatatcccctgctg
caaaaggtgctcaagcccggccaggaaatcctggtgcagattggcaaggagcccaccggc
accaagggggccttcctcaccacgtatctttccatcgccggccggcatctggtgctcacg
cccggacgcgagcagatcggcgtctcccgcaaggtggaggacgaagaggaacgcgcccgg
ctcaaggagatcatgaacggcatcacccctggcgaaggcctgggcgtgattgtgcgcacc
gtgagcgagggcctctccaagaccaatctgaccaaggacctgcagatccttgaacgccag
tggaaggagattcgcaagcgcgggcaggaggccgaatcccccagcctgatctaccaggaa
ccggatctggccgaacgtgccgtgcgcgactacttcaccgccgacgtgggcgaaatctgg
gtggatgacgccaccaccgccgagcgcgtggccgcctatgccgccatcctcttcccccgc
tccaaaagcctggtgaagcaccacgatgccacggaccgcaccctgtgggagcgcttcaat
ctgcaaaaacagatcgaccagctctacagccgctacgtgaccctgccctcgggcgggcag
ctggtgttcgatcaggccgaagccctgatggccatcgacatcaactccggccgcaccggc
ggcaagtccaatttccatgaaaccgccttccgcaccaatatggaagccgccgagaccatc
ccccatcagctgcggctgcgcgatgtgggcgggcagatcgtcatcgatttcatcgagatg
aaggaccgcaagcagtgggcggaagtggaaaagaccctcaaggccgccatgaaggtggac
cgcgcccgccacgacatcggcaagctgaacaaattcgggttgttgcagatggtgcggcag
cggctgggctcctcggccatctccctgtcctcggaagcatgcccggcctgccagggcacg
gggttccggcggaacatggaatggcagtccatgcaggccctcaagcagatttacttccag
ttgcgcgccaacaccggccaggcccagctggagattcccctgccgccggagctgtgcctg
tatctgctcaaccgcaaaaaggaaaagctcctggccatggagcagcagtacggcacccag
ctgaccctgaccatgcgtcacgggtag
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