Megalodesulfovibrio gigas: DGI_3383
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Entry
DGI_3383 CDS
T02851
Symbol
rho
Name
(GenBank) putative transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dgg
Megalodesulfovibrio gigas
Pathway
dgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DGI_3383 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dgg03021
]
DGI_3383 (rho)
03019 Messenger RNA biogenesis [BR:
dgg03019
]
DGI_3383 (rho)
Transcription machinery [BR:
dgg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DGI_3383 (rho)
Messenger RNA biogenesis [BR:
dgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DGI_3383 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
AAA_22
NACHT
ATPase_2
OB_RNB
S1CSD-TOTE-2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AGW15069
UniProt:
T2GFV6
LinkDB
All DBs
Position
complement(3538152..3539678)
Genome browser
AA seq
508 aa
AA seq
DB search
MQQPAASYPAQPTPAQPTPPAQDTPAAPAAPAGNGNQAAPPTAAAPAAAPAAAPAAPPPA
QPAPAHPGKSHGRKRNRSPQHQQQQPNGNSDNVLHLSELKLKSMTDLMLLAEQFNIENAS
SMRKQELIFALLQSCASQNGAIYGDGVLEILPDGFGFLRSPMYSYMPGPDDIYVSPSQIR
RFSLRKGDIVSGQIRPPKEGERYFALLRVSEICLEAPEKAKNIVLFDNLTPIYPDRRYIM
ETTESNFSGRVVDLLSPIGCGQRGLIVAPPRTGKTMLLQSIANSINANHPDVYLIVLLID
ERPEEVTDMERNVRAEVVSSTFDEPPTRHVQVAEMIMEKAKRLTERKRDVVVLLDSITRL
GRAYNAVTPSSGRVLSGGLDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEV
IFEEFKGTGNMEIYLDRHIAEKRTFPAIDINRSGTRKEELLLPDEVLNRVWILRKVLAPM
NSMDSMDFLLSKMRGTKTNREFLDVMNR
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaacctgctgcctcctaccccgcgcaacctacgccggcacagccgacccccccg
gcgcaagacacgccggctgctccggctgctcccgccggcaacggcaaccaggctgccccg
cccaccgctgcagctcctgcggcagctcctgcggcagccccggccgcaccgccccccgca
cagcctgccccggcccacccaggcaaaagccatggcagaaaacgcaaccgcagcccgcag
caccagcagcaacagccaaacggcaacagcgacaacgtcctgcacctctccgagctcaag
ctcaaaagcatgaccgacctcatgctgctggccgagcagttcaacatcgaaaacgccagc
tccatgcgcaaacaggagctcatcttcgccctgctgcaaagctgcgcctcccagaacggc
gccatctacggcgacggcgtgctggaaattctccccgacggtttcggctttctgcgctcc
cccatgtacagctacatgccgggcccggacgacatctacgtctccccctcgcagatccgc
cgcttctccctgcgcaagggcgacatcgtctccggccagattcgcccccccaaggaaggc
gaacgctactttgccctgttgcgagtgagcgaaatctgcctggaagcgccggaaaaagcc
aagaacatcgtcctgttcgataacctcacccccatctatcccgaccgccgctacatcatg
gagaccaccgagtccaacttctcgggccgcgtggtggatctcctctcccccatcggctgc
gggcagcgcgggctcatcgtggcccccccgcgcacgggcaagacgatgctgctgcagtcc
atcgccaactccatcaacgccaaccatcctgacgtctacctcatcgtcctgctcatcgac
gaacgccccgaggaagtgacggacatggaacgcaacgtgcgggccgaggtggtctcctcc
accttcgacgaaccccccacccgccacgtgcaggttgccgaaatgattatggagaaggcc
aagcgcctcaccgagcgcaaacgcgacgtggtggtgctgctggattccatcacccgcctg
ggccgggcgtacaacgccgtcaccccctcctccggccgcgtgctctccggcggcctggac
gccaacgccctgcagcggcccaagcgcttcttcggcgccgcccgcaacatcgaagaaggc
ggcagcctgaccatcatcgccaccgccctcatcgacaccggctcgcgcatggatgaagtg
atttttgaagaattcaagggcaccggcaacatggagatctaccttgatcgccacatcgcc
gaaaagcgcaccttcccggccatcgatatcaaccgctccggcacccgcaaggaagaactg
ctgctgcccgatgaggtgctgaaccgcgtctggatcctgcgcaaggtgcttgctcccatg
aactccatggattccatggatttcttgctctccaagatgcgcggcaccaagaccaaccgc
gagttcctggacgtgatgaaccgctaa
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