Megalodesulfovibrio gigas: DGI_3417
Help
Entry
DGI_3417 CDS
T02851
Name
(GenBank) putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
Organism
dgg
Megalodesulfovibrio gigas
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GGDEF
AAA_16
Pkinase
PK_Tyr_Ser-Thr
PAS
PAS_9
GAF
GAF_2
PAS_4
PAS_8
TPR_12
GAF_3
PAS_3
ABC1
Kinase-like
Sigma54_activat
AAA_22
Kdo
NACHT
ActD
OmpH
SNAP
Motif
Other DBs
NCBI-ProteinID:
AGW15100
UniProt:
T2GEV4
LinkDB
All DBs
Position
complement(3571913..3577372)
Genome browser
AA seq
1819 aa
AA seq
DB search
MIFLSGFRVGELLYQGPKSQVYRARRDRDGLPVVLKIPATPEISIRENLRFQHEYDLLSS
LQLSRVIKVYDLLQYRTSFAIVEEDFGACDLAHHIEGRRLAPREFLDIAVQMAEALAQLH
GQHIIHKDVHLANFLIHPETGVLKLTDFGLSSLIEDEVQEPENPNQIEGNLYFIAPEQSG
RMNRGIDSRSDLYSLGVCFYRMLTGELPFTSRDPMELLHAHIARRPVRPHELNPAVPAAL
SALTMRLLEKMAEDRYQSATGLLHDLETMRTACASGASLFDIRLGQRDVSSQFQVSQKLY
GREPEVRRLLDTFERVAGGGAELLLVGGYSGIGKTALVNEVHKGLTRQRGRFISGKHDQF
QRSIPFSAFIQAFRQLSHQILSEPEAMVTEWRMALLAALGPNAQVILDVIPEMEHILGPQ
PPVPDLGPSEAQNRFILCLQRFIGVFARPEHPLVIFLDDLQWADVPSLHLLQKLVGGTDA
TNLLLLGAYRDNEVSPGHPLMLAARRLHESGVTVHTVTLTPLDFADLCRLVADTLHRPPL
EVEELTLLIKEKTGGNPFFVSQMLKELHTRGLFQLDPESGVWVWDMDGIRAMGLTDNVVD
LMAGKIGRMAPQTRQALQLAACIGNRFTLPMLAAIHEKSQAHTSEALWEALQAGLLIPSG
ATFRFLHDRVQQAAYSLIAQEDIAPLHLRIGRLLLRHVGHTQLDDAIFDIVAHFNAALDL
VLDPEERLLLLDLNMQAGRKAKASTAYEPALHHFEVAASLMPADGWRTHARTMLDVVREK
ADVSYLLGDFAQAEALLDQALLHTADRFDKVEVYIQKLIQSNQLGKYNELMDIARDALAL
FGVDLPQADDAATLARCFAAQMQDYTELLAGRPIAELIHVPDVKDRDQDSIIQLMAILTD
GAYIAVPTLFPHLVMDVVTRSMRHGHNALSAIGFAWATVVIVQQQQDYRSAFALGTLSMQ
LIERFPNPRIQAQITFLYAVCAMHWFLPLADQIEMYKRAYQYGLENGNLVFAGYARTMIP
KTVLAASTVDNALEENDISVAFYEKRGSPFYMSERFYSLFLHNLKGEGADPVSLSTPEID
EHAFLTHWQHPDSLFGHGLAYFLTCKLQLLFYFGKTAEAWRFAEAHASWMQYIPILYETT
VFSFFCAMAAAELLETTSGTSAGKEGEAARSEEQDEERPRMRARFAASLSEFAVWAENCP
ENFAWQERLLHAEQARLTGRPQDALELYAQAAEVATRHGHPQGVALARERAALVLRQRGD
AEAARAFFEDASFNYYQWGAHAKVLMLRQEIDTCATPGVHSLLESHTLDNSRESNVHYIS
PSQLLDIGSILKATQAISSEIHQDALLQVIMTSVIENAGAEHGFLLLPSSSEGQDWSVAA
MATVEGQQPLDNSPLAGSTLVSEAIARFVIRSRQEIVLHDAGQHPTFQRDPHVVRKHVRS
VLCMPLLSQNRLSGVLYLENNLNPGVFAIDRAQTVKMLAAQAAISIENANLYARLVASEQ
RYRSIFEDASDLIFLTTIDGRVVDVNPACLGMLGYTREELLSLTMADLYVDPQQRVHFQR
TIEAVGTVRGFEVKLRRKGGERIEAILAANLRRDAQGRSIGYQGILHDVTATKQAERLRE
AYSQDLERQVQERTQELSEANDKLQWLSDHDGLTGIANRRKFDAALHAEWNRALRSASPL
TLALVDVDNFKAYNDHMGHLRGDDCLRQVAQTLAARVRQSCDLAARYGGEEFAVLLPGLG
AASALAVASKLCASIMELGIPHGKSPTADVVTVSMGVATCFPTQALHPEALVQAADANLY
QAKRQGRNRAIASSLGVGK
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgatattcctttccggattccgcgtgggcgagctgctctaccaggggcccaaaagtcag
gtatatcgcgcccgccgcgaccgcgacggcctgccggtggtgctcaagattccggccacg
cctgaaatctccatccgcgagaatcttcggtttcagcacgaatacgacctgctctcctcc
ctgcagctgtccagggtaatcaaggtctacgatttgctgcaataccggaccagctttgcc
attgtggaagaggatttcggagcctgcgacctggcccaccacatcgaaggccgccgcctc
gccccgcgggaatttctggacattgccgtgcagatggccgaggccctggcccagctgcac
gggcagcacatcatccacaaagatgtccatctggcgaatttcctcatccaccccgaaaca
ggcgtgctcaaactgacggattttgggctgtcctccctcattgaagacgaggtgcaggag
ccggaaaacccgaatcaaatcgaaggcaacctgtacttcatcgcccccgagcagtccggg
cggatgaatcggggcatcgacagccggtccgatctgtattccctgggtgtctgcttctat
agaatgctcacgggggagctgccgttcacctcccgggaccccatggagctgctgcacgcc
cacattgcccggcggcccgtgcggccccacgagctgaaccccgccgtaccggcggcgctt
tccgccttaaccatgcgcctgctggaaaaaatggccgaggaccgctaccaaagcgccacc
ggcctgctgcacgacctggaaaccatgcgcacggcctgtgcttcgggggcaagcctgttt
gacatacgcctgggccagcgggacgtgtcgtcccagttccaggtctcgcaaaagctctac
ggcagggagccagaagtgcggcggctgctggataccttcgagcgcgtggccggaggtggt
gcggaactgctgcttgtggggggctattccggcatcggcaaaaccgcgctggtgaacgag
gtgcacaagggtctgacgcggcagcggggccgcttcatttctggcaagcacgaccagttt
cagcgcagcatcccgttttccgcattcatccaggcctttcgccagctgagccaccagatt
ttgtccgaaccggaagccatggtgaccgagtggcgcatggcgttgctggctgccctgggg
cccaacgcccaggtgattctggatgtcattcccgagatggagcacatcctggggccgcaa
ccgcccgtcccggacctggggccgtcggaggcgcagaaccggttcattctttgcctgcaa
cggttcattggcgtattcgcccggccagagcaccccttggtcatttttcttgatgacctg
caatgggcggatgtgccgtcgctccatttattgcagaaactggtgggcgggacggatgcg
acgaacctgctgctgctgggcgcctaccgggacaacgaggtttccccagggcacccgctg
atgctggctgcccgccgtctgcatgaatccggtgtcacggtacacaccgtgaccctgacc
cccttggactttgccgacctgtgccggctggtggcagacaccctgcaccgtccgcccctg
gaggtggaagagctgacgttgctcatcaaggagaagaccggcggcaacccgtttttcgtt
tcgcaaatgctcaaggagctgcacacgcgggggctgttccagctggatccggaatccggc
gtctgggtgtgggacatggacggcatccgcgccatggggctcaccgacaacgtggtggat
ctcatggccggcaaaataggccgcatggccccgcagacgcggcaggcgctgcagctggct
gcctgcatcggcaaccggttcaccttgcccatgctggccgccattcacgaaaaatcgcag
gcgcacaccagcgaggccctttgggaggcgctgcaggcaggactgctcatcccctcaggc
gccaccttccgctttctgcacgaccgcgtgcagcaggcggcctattccctcatcgcccag
gaggacattgccccgctgcacctgcgcatcggccgcctgcttctgcgccatgtggggcac
acgcagcttgatgacgccatcttcgatattgtggcgcatttcaacgcagcgctggatctg
gttctggatcctgaggaacggttgctgctgctggatctgaacatgcaggccgggcgcaag
gccaaggcctccaccgcgtacgagccggcgctgcatcattttgaggtggccgcctcgctg
atgcctgcagacggctggcggacgcacgcccggaccatgctggacgtggtgcgcgaaaaa
gccgacgtctcctacctgcttggcgacttcgcccaggccgaagccctgctggaccaggcc
ctgttgcacacggccgaccggttcgacaaggtggaggtctacatccagaagttgatccag
tccaatcagctgggcaagtataacgagctgatggacatcgcccgggacgccctggccctc
tttggcgtcgatctgccccaggccgatgatgcagccacccttgcgcgctgttttgcggcg
cagatgcaggactacacggagctgctcgccggacggcccatcgccgagctgatccacgtc
ccggacgtgaaagatcgggaccaggacagcattatccagctcatggccattctgaccgac
ggcgcctacatcgccgtgccgacgctgtttccgcatctggtcatggatgtggtcacccgg
tccatgcgacacggccacaatgccttgtccgccattggctttgcctgggccacggtggtc
attgtgcagcagcagcaagactaccgcagcgcctttgccctgggcacgctctccatgcag
ctcatcgagcgctttcccaacccccgcatccaggcgcaaatcaccttcctgtatgctgtg
tgcgccatgcattggttcctgcccctggccgaccagatagaaatgtacaagcgcgcctac
cagtacggccttgaaaacggcaacctggtgttcgccggctacgcccggaccatgatcccc
aaaactgtcctggcggcctccaccgtggacaacgccctggaagaaaacgatataagtgtg
gccttttacgagaagcgcggctcgcccttctacatgagcgaacggttttacagcctgttc
ctgcacaacctgaagggtgaaggcgccgatcctgtctcgctgagcacgccagagattgac
gaacacgccttcctgacgcactggcagcaccccgactccctgttcggccatggcttggcc
tatttcctgacctgcaagctccagctgctcttctacttcggaaagacggccgaggcctgg
cggtttgcagaggcccacgccagttggatgcagtatatccccattctgtacgaaaccacg
gtgttcagcttcttttgcgccatggccgcggcagagctgctggaaacgacctcaggcaca
agcgctggcaaggaaggagaagcagccaggagcgaagaacaggacgaggaacggccgcgc
atgcgcgcccgctttgcggcctcgctgtccgaattcgccgtctgggcagagaactgcccg
gaaaatttcgcctggcaggaacgcctgctgcatgccgaacaggcccggctgaccggccgg
ccccaggacgcgctggagctgtatgcccaggccgcagaagttgcaacccggcatggccat
ccccagggcgtcgccctggcccgggagcgcgcggccctcgtgctgcggcagcgcggagac
gcagaagcggccagggccttttttgaagacgcaagcttcaactattaccaatggggcgcg
cacgccaaggtgctcatgctgcgccaggagatcgacacctgcgccacgccgggggtgcat
tccctcctggagtcccacacgctggacaactcccgggaatccaacgtccactacatctct
ccttcgcaactcctcgatatcggcagcatcctcaaagccacccaggccatttccagcgag
attcaccaggatgcgctgctgcaggtcatcatgaccagcgtcatcgaaaacgccggcgcc
gagcatggatttctcctgctgccaagcagctcggaggggcaggattggtccgtggcggcc
atggccacggtggagggacagcagcccctggacaacagcccccttgcaggctccaccctg
gtcagcgaagccattgcgcgattcgtcatccgcagccggcaggaaatcgtattgcatgat
gcggggcagcaccccacgtttcagcgggacccgcacgtggtgcgcaagcatgtgcgctcc
gtgctgtgcatgccactgctgagtcaaaaccggctcagcggcgtgctgtacctggaaaac
aatctcaatcccggcgtgtttgccattgaccgggcgcaaaccgtcaagatgcttgcggcg
caggcggccatctccatcgagaatgccaatctttacgcccgtcttgtcgccagcgagcaa
cgctaccgcagcatcttcgaagacgccagcgacctgattttcctcaccaccatagatggc
cgcgtggtggatgtgaacccggcctgcctgggcatgctcggctacacgcgagaggaactg
ctctccctcaccatggcggatttgtatgtcgatccccagcagcgcgtccactttcagcgc
accatcgaagcagtcgggacggtgcggggctttgaagtcaagctgcgccgcaagggcggg
gaacgcatcgaggccatcctggcggcaaacctgcggcgggacgcgcaggggcgcagcatc
ggctaccagggcattctgcacgatgtgaccgccacaaagcaggcggagcgcctgcgggag
gcctacagccaagacctggaacgccaggtgcaggagcgtacccaggagctttccgaagcc
aacgacaagctccagtggctgagcgatcacgacggcctgacgggtattgccaaccggcga
aagtttgatgcggcgctccatgccgaatggaaccgcgccttgcgcagcgcgtcgcccctg
acactggccctggtggatgtggacaacttcaaggcctacaacgatcacatgggccacctg
cgcggcgacgactgcctgcgtcaggtcgcccaaaccctcgccgccagggtcaggcagtca
tgcgatctcgccgcccgctacggcggcgaggaattcgccgtcctcctgcccggcctcggc
gcggcctcagccctcgcggtggccagcaagctgtgcgccagcatcatggaactgggcatc
ccccacggcaaaagccccacggcggacgtggtgaccgtgagcatgggcgtcgccacctgc
ttcccaacgcaagcccttcatcccgaggccctggtccaggcggccgacgccaatctgtat
caggccaaaaggcagggaagaaaccgggcaatcgcttcgtctttgggagttggcaagtag
DBGET
integrated database retrieval system
