Desulfoscipio gibsoniae: Desgi_0531
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Entry
Desgi_0531 CDS
T02657
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dgi
Desulfoscipio gibsoniae
Pathway
dgi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Desgi_0531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dgi03400
]
Desgi_0531
Enzymes [BR:
dgi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Desgi_0531
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Desgi_0531
DNA repair and recombination proteins [BR:
dgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Desgi_0531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Motif
Other DBs
NCBI-ProteinID:
AGL00098
UniProt:
R4KAA0
LinkDB
All DBs
Position
514592..515197
Genome browser
AA seq
201 aa
AA seq
DB search
MPELSEIFQLSEQINREFRNQIIKDVHVIEEKCLNMPAADFISILSDKRIEHITSRGKWV
CIKLEQDYRLLLSLGMGGNVILHENDQTLPDKYQLRIDIHDGRLLTIGFWWFGYVHAVNG
SDLGNHKMTAKLGHTPIRDSGFTEEHFVGLLKGRKGSVKSFLLNQNNIAGIGNVYIQDIL
FKAKMHPNRKLQTITLSSLRA
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgtcggaaatttttcagttgtccgaacagataaacagggaatttaggaac
caaataatcaaagacgttcatgtaatcgaggaaaagtgtcttaatatgcctgctgccgat
ttcatcagcattttatcggacaagcggatcgaacatattacatccagggggaagtgggtt
tgtataaaacttgagcaggattaccggcttcttttaagccttggtatgggaggaaatgtt
atcctgcatgaaaatgatcaaaccttgcccgacaagtatcagttaagaattgatatccat
gacgggcggttattaactatcggcttctggtggtttggttatgtacatgccgtaaatggc
agcgatttaggaaaccataagatgacggcaaagcttggtcatacaccgatcagggattcc
gggtttacggaagaacactttgttggtctccttaaaggcaggaaaggctctgtcaagagc
tttttgctcaaccagaacaatatcgcaggcatcgggaacgtatatattcaagacatattg
ttcaaggcaaagatgcaccccaacaggaaactgcaaaccatcactttatcatccttacga
gcataa
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