Desulfoscipio gibsoniae: Desgi_1638
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Entry
Desgi_1638 CDS
T02657
Name
(GenBank) formamidopyrimidine-DNA glycosylase Fpg
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dgi
Desulfoscipio gibsoniae
Pathway
dgi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Desgi_1638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dgi03400
]
Desgi_1638
Enzymes [BR:
dgi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Desgi_1638
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Desgi_1638
DNA repair and recombination proteins [BR:
dgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Desgi_1638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
NFACT_N
Zn_ribbon_IS1595
Auto_anti-p27
Zn_ribbon_SprT
Acetyltransf_6
DZR
DUF7573
Zn_ribbon_TFIIB
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
AGL01110
UniProt:
R4KKS0
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All DBs
Position
complement(1667517..1668347)
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AA seq
276 aa
AA seq
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MPELPEVETVKRTLDKKITGLTITGVDIAMPKIIREPDPENFAAQVTGRKITRLGRRGKY
LLLYLTGENVLIIHLRMTGRLVYTAPDEPLPKHTHVIFKLSDGNELRFNDIRQFGRLLLT
PKKDLNKVKGLKDLGPEPLEREFSRDFLRRELKRKRTRIKSLLLDQTFIAGLGNIYVDEA
LHRARLHPMRIASSLTPREVANLYHSIVEVLQEGIQNRGTSFRDYVDGDGRKGNYQELLR
VYNREGEPCPHCGTAITRIKVSGRSSYFCPACQREQ
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctgccggaagttgaaacagtcaaaagaacactggacaaaaaaataacgggg
cttaccataaccggtgtggatatagccatgcccaaaattatccgggaacccgatccggag
aattttgccgcgcaagtcacgggccgcaaaattacccggctgggacggcgcggcaagtac
ctgctgctgtatctaaccggtgaaaatgtacttattatccacctgcgcatgaccgggcgc
ctggtttataccgcgcctgacgagccgctgcccaaacatacccatgtaatctttaagctc
agtgacggcaatgaactgcgctttaacgacatacggcagttcgggcgtttgctgctgacc
cccaaaaaggacttaaacaaggtcaagggtctaaaagatttgggaccggagcctttagaa
cgggagttctccagggattttttgcgccgggagctaaaacgcaaacggacgcgcattaag
tcactgctgctggatcaaacgtttattgccggcctgggtaatatttatgttgatgaggcc
ttgcaccgggcccgtctgcatcccatgcgcatagccagctcgcttactccccgggaggtg
gccaacctgtatcactccatcgttgaggtgctgcaagagggcatccaaaaccgtggtaca
tcgttcagggattacgtggacggtgacggccgcaaaggtaactaccaggagttgctgcgg
gtttacaaccgcgagggcgaaccatgtccccactgcggcacagcaatcacccgcatcaaa
gtaagcgggcgcagctcgtacttctgccccgcctgccagcgggaacaataa
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