Desulfoscipio gibsoniae: Desgi_2394
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Entry
Desgi_2394 CDS
T02657
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dgi
Desulfoscipio gibsoniae
Pathway
dgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desgi_2394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgi03019
]
Desgi_2394
03400 DNA repair and recombination proteins [BR:
dgi03400
]
Desgi_2394
Enzymes [BR:
dgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Desgi_2394
Messenger RNA biogenesis [BR:
dgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desgi_2394
DNA repair and recombination proteins [BR:
dgi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Desgi_2394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AGL01808
UniProt:
R4KF44
LinkDB
All DBs
Position
complement(2422565..2424370)
Genome browser
AA seq
601 aa
AA seq
DB search
MERARVLLKKYYGYRYFRVGQEKIISNIFGGRDTLVVMPTGGGKSICYQVPALALPGITL
VISPLISLMKDQVDALINQGIPAVFINSTLAYRDAVKRMHDLARGSYKLLYIAPERLESD
SFLELIYQLNVSLVAVDEAHCVSQWGHDFRPSYLAIARLINGFATRPVVAAFTATATEAV
RRDIIEQLGLLNPLIHIGGFDRPNLYLQVNKGEDKKNFLLQYLSQNEGRSGIIYAATRKE
ADSLYDFLQAKGFSVGKYHAGLSDRERNRAQDDFIHDNIQVIIATNAFGMGIDKSNVRFV
IHHNMPKNMEAYYQEAGRAGRDGESGECILLYSPQDIQVQKRLIELNESTPERREADYRK
LQAMIGYCHTPQCLRRYILTYFGDAEAADTCSNCFNCSGDCELVDITVQTQKILSCLWRM
REQYGITMVAGVLKGSRNKKVQQLGFDRLSTYGLLSNYTIQEIKDMINMLIAEGYIAMTQ
GEYPVLKLKENAYPVLKGQASVYQKVRREKQARVDDNLFQVLRRLRKDIAVREKLPPYMI
FSDKTLQDMSRCCPVDEQALLAVSGVGEFKLQRYGAEFLQEIRRYLEEGGVVDYPNVERG
I
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagcccgggtactgttgaaaaaatattacggttatagatactttcgggtaggc
caggagaaaattatcagcaatatttttggtgggcgagatacgttggtggtaatgcccacc
ggcggaggtaaatccatttgttaccaggtaccggccttagcgttgccaggtattacactt
gttatatcaccattgatatcgctgatgaaagaccaggtggatgcattaatcaatcagggc
ataccggccgtatttattaatagtacgctggcctaccgtgatgctgtcaaacgtatgcat
gacctggcccggggctcttacaaactgctgtatatagcaccggaacggctggagtcagat
tcctttctggagcttatttaccagcttaatgtttccctggtggccgtggatgaagcgcac
tgcgtttcccaatggggtcatgacttcaggcccagctatctggctattgccaggctgatc
aatggttttgccacccggccggtggtggccgcttttacagccaccgccacggaggcagtg
aggcgggatatcattgaacaactgggcctgctaaatcccttaatccacattggagggttc
gatcgtcctaatttatacctgcaagtgaataaaggtgaagacaaaaaaaacttcttgctt
caatacctgagccagaatgaggggcgttcaggcattatctatgctgccacgcgcaaggaa
gcggacagcctgtacgactttttacaggctaaagggttttccgtcggcaagtatcatgcc
gggctgagcgatagggagcgcaaccgggctcaggacgactttatccatgacaacattcag
gtaattatagcaaccaacgcatttggtatgggtatcgataaatctaatgtgcgctttgta
atccatcacaatatgcccaagaacatggaggcttactaccaggaggccggccgggccggg
cgtgacggtgagtctggtgaatgtatacttttatacagcccgcaggatatccaggtgcaa
aaaagactaattgaacttaatgaatcgaccccggagcgcagggaggccgattatcgcaaa
ttacaggctatgattggttattgccatacgccgcaatgtttacgccggtatatcttaact
tattttggcgacgcggaagctgccgatacgtgtagtaactgcttcaactgcagcggtgat
tgtgagctggtggatatcactgtgcaaacgcaaaaaattttatcatgcttgtggcgcatg
cgggaacaatacggcataacaatggtggccggtgttttgaaaggttcacggaataaaaag
gtacagcagctgggatttgatcgtttatccacctatggattgttaagcaattataccatc
caggaaattaaagatatgattaacatgctcatagccgagggttatattgccatgactcag
ggtgagtaccctgtgcttaagttaaaggaaaatgcttacccggtactgaaaggccaggcc
agtgtgtaccaaaaagtgcgccgggaaaaacaagcccgggttgacgacaaccttttccag
gtgctgcgccggctgcgtaaggatattgcagttcgggaaaaactgccgccatatatgata
ttctccgacaagacgctgcaggatatgagccggtgctgcccggtggatgaacaggcactg
ctggctgtcagtggggtgggggaattcaagttgcaacgctacggcgcagaatttttgcaa
gaaatacggcgttatttggaagagggcggagtcgtggattatcccaatgttgaacgtgga
atatga
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