Desulfoscipio gibsoniae: Desgi_2460
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Entry
Desgi_2460 CDS
T02657
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dgi
Desulfoscipio gibsoniae
Pathway
dgi03420
Nucleotide excision repair
dgi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Desgi_2460
03430 Mismatch repair
Desgi_2460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dgi03400
]
Desgi_2460
Enzymes [BR:
dgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Desgi_2460
DNA repair and recombination proteins [BR:
dgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desgi_2460
MMR (mismatch excision repair)
Other MMR factors
Desgi_2460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_14
Motif
Other DBs
NCBI-ProteinID:
AGL01872
UniProt:
R4KJT8
LinkDB
All DBs
Position
complement(2501558..2503747)
Genome browser
AA seq
729 aa
AA seq
DB search
MDLTALNEAQKKAVTYHDGPLLVLAGAGSGKTRVLTTRIAYLLLERGVDPYNILAITFTN
KAAREMRERIAAAVPELVHDLWVFTFHATCLRILRRQSGFAGYTANFVIYDADDQKTVIK
ECLKELNLDDKKFSPQAMSAAISQSKNMLYGPAEMEKKSYDYFSQTACKVYKLYQDKLRQ
NNALDFDDLLMQTVRLLQNNQAVLDYYQEKFRYILVDEYQDTNHAQYVLVNLLAQKYRNL
CVVGDPDQGIYGWRGADIQNIMSFERDYPDAAAIVLEQNYRSTRTILESANAVIRHNQDR
KEKKLWTAGSPGDPVTVFTARDEHSEARYVVDRISRWHHVFKKPYRNFAVLYRTNAQSRV
LEEKFLTTGIPYTIVGGLRFYERKEIKDLLAYLRLLVNPNDRLSLRRVINEPKRGIGAAS
LNKIFTRADETGQAPLTLLENASSIPGLTGKAANAARFFGQTMGDIRKRMSALPITRLVQ
MVLEETGYWQALDNERTVESRTRMENLREFYSVTGEYDGLGDGSGLEDFLASLALVTDLD
NYEQDADQVTLMTMHSAKGLEFPVVFITGLEETVFPHSRSMDDRYELEEERRLCYVGITR
AMEHLYLTHCWQRTLYGYTRMNEPSRFLQELPPDLLNTQDPLDKQVRSSTVKEPSSANPA
NMGPLKDSQAGQRPGKNIFYSAGEQVYHRKWGQGTIVDVRGKGDNAELKIDFPGLGIKTL
LARYAPLER
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggatttaaccgcgctgaatgaggcgcagaaaaaagcagttacttaccatgacgggccg
cttttggtgctggccggggcgggcagcggcaaaacccgggtgctcaccaccagaattgct
tatttactactggaaaggggtgttgacccgtataacattttagctatcacgtttaccaat
aaagcggccagggaaatgcgggaaaggattgcggccgcagtaccggagctggtgcatgat
ctctgggtgtttacctttcatgccacttgtctgcgtattttgagacggcagtccggattt
gccgggtatacagctaattttgtcatttacgatgcggatgatcagaaaactgttattaag
gagtgtctcaaggaattaaacctggatgataaaaaattttctccgcaggctatgtcggcg
gccatatctcaatctaaaaatatgctttacgggccggcggagatggaaaagaagtcttac
gattatttcagccaaactgcctgcaaggtatataaactttaccaggacaagctgcggcaa
aataacgcgctggattttgatgacttgctgatgcaaacagtgcggctgctgcaaaataac
caggctgtgctggactattaccaggagaaattccgttacatactggtggatgaataccag
gataccaaccatgcccagtatgtactggttaatttattggctcagaagtatcgcaattta
tgcgtggtgggagacccggatcagggtatttacggctggcggggggcggacattcaaaat
atcatgagttttgagcgggactacccggatgctgctgccattgttcttgagcaaaattac
cgttctacccgcactatactggaatccgccaatgcagtaatccggcataaccaggaccgc
aaggaaaaaaagctgtggaccgccggatctccgggcgatcccgttacagtttttactgct
cgggatgagcattccgaggcgcgttatgtggtggaccggattagtcgctggcaccacgta
tttaaaaaaccgtaccggaatttcgcagttttatatcgcactaacgcccagtcccgggtg
cttgaagaaaaattcctaaccaccggaataccgtacaccatcgtgggcgggctgcgcttt
tatgagcgtaaggaaattaaggacctgttagcttacctgcggctgctggtcaaccctaat
gaccggttgagcctgcggcgggttattaatgagcctaaaaggggcattggtgctgcatca
ttaaataaaatatttaccagagcggatgagaccggccaggcgccccttaccctgttggaa
aacgcttccagtattcccggcctaaccggcaaagctgctaatgcagcccggttttttggc
caaactatgggtgatatcagaaaacggatgtcagctttgcctattactagactggtgcag
atggtgctggaggaaaccggttactggcaggcgctggataacgagcgtactgtggaatcc
agaacccgtatggaaaacctgcgtgagttttactcggttaccggtgagtatgatgggctg
ggtgatggcagtggcctggaggatttcctggcttctctggccctggttacggatctggat
aattatgagcaggacgcggaccaagttactttaatgaccatgcacagtgccaaagggtta
gaattccctgtggtatttataactggcctggaagaaaccgtctttcctcactcccgttct
atggatgacaggtatgaattggaggaagaaagaaggctgtgttacgtgggcataaccagg
gcgatggagcacctgtatctgacccattgctggcagcgtaccctttatggttataccagg
atgaatgagccttcccgctttttacaggaattgccccctgatttgctgaacacccaggat
cctttggataaacaagtaaggagcagcacggttaaggaaccttcttcagctaatccagca
aacatggggccactaaaggacagtcaagccggtcagcgtccgggcaaaaatatattctat
agcgccggggaacaggtgtaccatcgcaaatgggggcagggcaccatcgtcgatgtaagg
ggtaaaggagataatgccgagttgaaaatagattttcccgggctgggtattaagacgctc
ctggcccgctacgcaccgctggaacgttag
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