KEGG   Desulfoscipio gibsoniae: Desgi_2880
Entry
Desgi_2880        CDS       T02657                                 
Name
(GenBank) Lhr-like helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
dgi  Desulfoscipio gibsoniae
Brite
KEGG Orthology (KO) [BR:dgi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dgi03400]
    Desgi_2880
Enzymes [BR:dgi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Desgi_2880
    5.6.2.6  RNA 3'-5' helicase
     Desgi_2880
DNA repair and recombination proteins [BR:dgi03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Desgi_2880
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD Helicase_C WH4_Lhr ResIII WH3_Lhr Cas3-like_C_2 AAA_25
Other DBs
NCBI-ProteinID: AGL02279
UniProt: R4KI39
LinkDB
Position
complement(2936244..2940740)
AA seq 1498 aa
MNHSVLDLFHPLIRKWFVEKVGLPTDIQAQAWPRVAKGEHVLITAPTGSGKTLTAFLWSL
QKLITGDWLGGRVRVLYVSPLKALNNDVQRNLLKPLEEMRAYFEEVGELFPPIRVLTRSG
DTPQNERRQMLRRPPEILITTPESLNLLLSSKNNRMILSGVETVILDEIHAVLDSKRGTH
LITAVDRLVPLAGEFQRIALSATVRPLEPVAEFVGGLKARQAGEDYRYEKRPVVILRSTV
KKQYNLTVDAIKQNNDGVEGEQDALWQALAAALTKVIRENNATLVFCNNRRTVEKLTRYI
NDAAGEPLVYSHHGSLARELRLAVEHKLKHGELKGIVATNSLELGIDIGELDTVILVQTP
PSLTAAVQRIGRAGHGVGQVSRGTLFPVFGHDFLEAAVTSLNLPAAEIEPIAPIEATLDV
LAQVLLSMTAVQTWDVDELYAFLKTSYPYRHLPRKSYDLLLEMLAGRYADTRLRELKPRI
IWDKLDHTVKARDGAVRLVYQGGGTIPDRGYYDLRLMDTKAKIGELDEEFVWERNVGETF
MLGTRVWRIMRVTHNDVEVVPGDRTINIIPFWRAEEQNRDFYFAEKIGLFLEEADQNLET
EWFAHQPVFKNTWSPYAVERLLAFLKEQKEATGQPLPHRHHILIEHFADPLNTADSKQVI
IHTLWGGKVNRPLAMALAAAWERKFGYPLEIYVSNNSVMLMLPHSFAPLDLFSLVSPQNL
EHLLRSKLESSGFFGAKFRENAGRALLLPRAGFKKRMPLWLNRLRAKKLMAAVTPYADFP
IMLETWRTCLKDEFDLETVKQLLDEINDGRIGISETVTHQPSPFASDVIWRQTNKYMYED
DTPFSDQQSGLSQELLKELVYAPHLRPAIPEALVRELDGKLKRTAPGYAPPDGEELLLWI
KERLFIPADEAASLFAAMQRDYRAADHSLTLDKIKRTLGDKVAWLHLSGTEQPGLCALEI
LPRIVACLGVGFSDLTLRPLIPQAADELSAGLNKASALFEQETGAESGELSSDTAFFVHQ
WLSYYGPVPREFVGRCLGLPAEVCAAVLATLLEEECIVADVLTQGASQEEVCDRENLERL
LAMARRARQPEFKPLPVTALPLFWATYQGVVEKGTAMEDLEDRFEQLFGFISQAQLWEEA
ILPARMEPYYTAWTDSLMQTSDLIWFGRGQKRTGFCFSDDLELFPPGVDCQGEEDEAEVQ
ALFPDSQGKYDFFALSRHTGLPSDVLTQKLWRHVWRGSITNDSFAVLRRGILTKFKPLQA
ENKRGFGRRAGYSRWSASRPLQGNWYALPESAERDLIEREELVKDRIRQLFSRYGVLFRE
LLHHELPEMQWRQIFRTLRLMEFSGEIYTGYFFEQITSLQFVSREANRFLRHGLNEEGIY
WLNAADPASPCGLKLPGIDEDLPARLPTNFVVFHGTQLKVVAKRNGKELLIKTGPDDPVL
PEYLAFCKTLLTRDFNPLKSVVVESINGLPALKSPYKKALQSIGFTGEYKSLILRRQY
NT seq 4497 nt   +upstreamnt  +downstreamnt
atgaatcactccgttcttgatttatttcatccgcttatccgcaaatggtttgtcgaaaag
gtgggcttgcctaccgatattcaggcccaggcctggccccgtgttgccaaaggcgagcat
gtcttaattacagctcccacgggtagcggtaaaaccctgaccgcctttctctggtcactg
caaaagctaattaccggcgattggctgggtggtcgggtacgggtcttgtatgtttcgccc
ttgaaggcccttaataacgatgtgcagcgcaacctgttgaagcccctcgaagagatgcgg
gcgtattttgaagaagtaggtgagctgtttccccctattcgggtactcacccgcagtgga
gacaccccgcaaaacgaacgccggcagatgctgcgcaggccgcccgaaattctaattacc
acacctgagagtctcaatctattgctcagttccaaaaacaaccgaatgattttaagcggg
gtggaaacggttattttggacgaaatccatgccgtcttggacagcaaacggggcacccat
ctgatcacggcggtggaccggcttgttcctttggcgggtgaattccaacgtatcgcctta
tccgctacggtccggcccctggaaccggtcgctgaatttgtgggtggcctcaaagcacgg
caagccggtgaggactatcgttatgaaaagcggccggtggttatcttgcggtcgactgtc
aaaaaacaatataacttgaccgttgatgctattaaacagaataatgatggggtggagggg
gagcaagacgctctttggcaggcattggctgccgccttgacgaaggtgattcgcgaaaac
aatgccaccctggtgttttgcaataaccgccggacagttgaaaaactaacccgctatatc
aatgatgccgcgggcgagcccctggtttactcccaccatggctcactggcccgggaactc
cgcctggcggtggaacacaaacttaaacatggtgaactgaaaggaattgtagctaccaat
tccctcgaattaggcattgatatcggcgaactggatacggtaattttggtgcaaaccccg
ccctcgctgactgctgccgtccaaaggattggccgggccggccacggggtgggccaggtg
agccgggggactttgttccctgttttcgggcacgattttttggaagctgcggtaacttca
cttaacctgcctgcggccgagattgagcccatcgctcctattgaagcgaccttggatgtg
ctggcgcaggtgctgttgtctatgaccgccgttcagacctgggacgtggatgagctttat
gctttccttaagaccagttatccctatcgccatttgccccggaaaagttatgacctgctg
ctggaaatgttggcgggccgctatgcggatacccgcttgcgcgaacttaaaccccgcatt
atttgggataagctggaccatacggtcaaagcccgggacggggcggtccgcctggtttac
cagggaggcggcaccatccccgacaggggttactatgacctccgcttgatggataccaag
gccaagataggtgaactggatgaggagttcgtttgggagcggaacgtgggcgaaaccttt
atgctgggtacccgggtatggcggattatgcgtgttacgcacaatgatgtggaagtagtg
cccggtgatcgaacaattaacatcatacccttctggcgggcggaagagcaaaaccgggac
ttctattttgccgaaaaaataggcctctttttggaagaggcggatcaaaacctggaaaca
gaatggttcgcgcatcagccggtgttcaaaaacacgtggtccccatacgccgtcgaacgg
ctcctggcatttctcaaagagcaaaaagaagcgacgggccaacctttgccccaccgacat
catatattaattgaacattttgccgaccccctgaacacggcggacagcaaacaggttatt
atacataccctgtggggcggcaaagtcaaccggcctttggccatggctttggccgccgcc
tgggagagaaagttcggttatcccctggagatatatgtcagcaacaacagcgtcatgtta
atgctgccccatagttttgcgccgctggatcttttctccctggtttcgccccaaaatctg
gagcatcttttacggagcaaattggaaagctcaggctttttcggtgccaaatttcgtgaa
aacgcgggacgtgccctgctattgcccagggccggtttcaaaaagcgcatgcctctgtgg
ctcaaccgcctcagggctaaaaaattaatggcagcggtcaccccatatgccgattttccc
atcatgctggagacctggcgcacctgcctgaaggatgaatttgatttggagacggtcaaa
caactgttggacgaaataaacgatggccgaatcgggatcagcgaaacagttacccaccaa
ccgtctccctttgcgtctgatgtaatttggcgccagaccaacaaatatatgtatgaagac
gacacccctttctccgaccagcagtcgggtttgagccaggaattattgaaagagctggta
tatgcacctcatttacggcccgcaatcccggaggccttagtccgggaattggacggtaaa
ctaaagcggaccgcgcccgggtatgcgccccctgacggggaggaactattgctttggatt
aaagaacgtctttttattcccgctgatgaagcagcctccctttttgccgctatgcaaagg
gattaccgggcagctgatcatagtttaaccttagataaaattaagcgcactttgggggat
aaggtggcctggctgcacctgtcggggacggaacagccgggcttgtgcgctctggaaatc
ttgccgaggattgttgcctgcctgggtgtcggcttttccgatcttaccctgcgtccctta
atccctcaggcagcggacgagctgtcggcaggcttaaataaagcttcggccctttttgaa
caggagacgggtgcggagtccggggaactcagtagcgataccgccttctttgtgcaccag
tggttatcctattacggtcccgtgccgcgggagtttgtcgggcggtgcctcggtctgccg
gctgaagtttgcgcggccgttttggccaccctgctggaagaggaatgtatcgtggcggat
gtgcttactcagggagccagccaagaagaggtatgtgaccgtgaaaatttggagcgcttg
ttggcgatggccaggcgtgcccgccagccggaattcaagcctttgccggtgaccgcactg
cccttattttgggcgacctaccagggggtcgttgaaaaagggacggctatggaggattta
gaagatcgctttgagcaattgtttggctttatcagccaggcccagctatgggaggaagct
atcctgcccgcgcgcatggagccttactatactgcttggacggatagcctcatgcaaacc
agtgatctgatttggtttggccgtggccaaaagcgaactggcttttgctttagcgacgat
ttggagctgttccctcccggtgtagattgtcagggagaagaagatgaagcggaggtacag
gcgcttttcccggattcgcagggcaaatacgatttctttgcgctcagccggcatacgggt
ttgccgagcgatgttttgacgcaaaagttatggcggcacgtatggcggggcagcatcacc
aacgatagttttgccgtgttgcgcaggggcatcctgaccaaatttaaacccctgcaggcg
gaaaacaagcggggtttcggacgccgcgcggggtacagccgctggtccgcttcgcgtcct
ttacagggcaactggtatgccttgccggaaagtgcagagcgggatctcatcgagcgggag
gaactggtcaaagacagaattcgccaacttttttcccgctatggggtgcttttccgcgag
ctgcttcaccatgaattgcccgagatgcagtggcggcagatttttcgtactctgcgcctc
atggagttttccggggagatttataccgggtattttttcgagcaaatcaccagtttacag
tttgtttcccgggaagccaaccgtttcttacgccatggattaaacgaggaaggtatttat
tggctgaacgcggccgatccggcatcgccctgcgggctcaagctgcccggtatagacgaa
gacctgcccgcccgtctgccgactaattttgttgtgtttcatggcactcaattgaaagta
gtggccaaacgtaacggcaaagagcttttgatcaaaaccggacccgatgatccggtttta
cctgaatacttggctttttgtaaaactctcttaacgcgtgattttaatccattaaaaagt
gtagtcgtagaatccattaacggcttaccggctctgaaaagcccctacaaaaaagcttta
caaagtattggctttaccggcgagtacaaaagtctgatattgagacggcaatattag

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