Desulfoscipio gibsoniae: Desgi_4301
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Entry
Desgi_4301 CDS
T02657
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
dgi
Desulfoscipio gibsoniae
Pathway
dgi02020
Two-component system
dgi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dgi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Desgi_4301
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Desgi_4301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dgi03021
]
Desgi_4301
Transcription machinery [BR:
dgi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Desgi_4301
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
RepL
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
AGL03544
UniProt:
R4KLL1
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All DBs
Position
complement(4384767..4386173)
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AA seq
468 aa
AA seq
DB search
MRMGYGLNIVQTQKLIMTPELRQAITVLQLSSLELGTYVEQQLQENPLLEIGEDFEKVSV
EEHLPDESGAGEKQKEYDIDWQDYFHDSSDLGMSRSEVRREQNEYSYEHYVTRAPNLIEH
LMLQLGLIRCAKRKRDIAEYIIGNINDHGYLGCSIDEIAKQVDAVADEVLDALKIVQAFD
PPGVGARSLQECLLLQLTYLGIDDPLAHVVVERHLMDLADGKYSRMAQVLGVPVQEIQRV
ADLLKTLDPKPGRNFSNFNDNRYIVPDIVLNKVDGEYVIITNDTSVPRLTINNTYRAVLG
QDKGDSQTKKFVEHKLNAAAWLIKSIEQRRLTLYKVTKCLVDLQRDFLDYGVKHLKPLNL
KTVADIVGLHESTVSRATSNKYIQTPQGVFEMKYFFSSGLNAGGSAVSAESIKKTLREIV
DGEDPKKPLNDQQIADILNGRGVKISRRTVAKYRDEMNIPPIRKRKRY
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatgggttatggtctcaacatcgtgcaaactcagaaactaattatgactcccgaa
ttgcgccaggccattaccgttttgcagctctcttccctggaactgggcacgtatgtggag
cagcagcttcaggagaacccgttgctggaaatcggggaggatttcgaaaaggtgagcgta
gaagaacacttacctgacgaatcaggcgccggggaaaaacaaaaggaatacgatatagac
tggcaggattattttcatgacagcagtgacctgggcatgtcccggtccgaggtgcgccgg
gaacaaaatgaatacagttatgaacattatgtcacccgtgcacccaatttaatagaacac
ctgatgctgcagctgggtctgatcagatgtgccaagcgtaaaagggacattgctgaatat
attattggtaatatcaatgatcatggctatctcggctgttcaattgatgaaatagctaaa
caagtagatgcggtggctgatgaggtgctggatgcattgaagattgtgcaagcctttgac
ccgccgggagtgggggcccgctcgctgcaggaatgcctgctgctgcaattgacttacttg
ggaattgatgaccccctggctcatgtggtggtggaaaggcatcttatggacctggctgac
ggtaagtacagccgtatggcccaggtgctgggcgtaccggtgcaagagattcagcgggtg
gccgacttgctgaaaaccctggaccctaaacccggtcgcaattttagcaattttaacgat
aaccggtatattgtacccgatattgtgttaaataaagtggatggtgagtatgtaattatc
accaatgatacttccgtgccccgcttgaccattaataacacctatcgtgctgtgctgggt
caggataagggagacagccagactaaaaaatttgtggagcataaattgaatgctgcggcc
tggctgataaaaagtattgagcagcgacgcctgaccctgtacaaggttactaaatgtttg
gttgatctgcagcgggactttctggattatggggttaaacatttaaaaccgctcaatctt
aaaacagtggctgatattgtgggactgcatgagtccacagtgtccagggccacttcgaat
aagtatattcagactccccagggtgtttttgaaatgaaatactttttctcttccggttta
aatgcgggagggtccgcagtttccgctgaaagcatcaaaaaaacattgcgggagattgtt
gacggggaggatcccaaaaaaccgctcaacgaccagcagattgcggatatacttaacggg
cggggcgttaaaatttcccggcgcacggtggccaaatatcgtgatgaaatgaatataccg
cccataagaaaaagaaaacgatactaa
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