Desulfoscipio gibsoniae: Desgi_4318
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Entry
Desgi_4318 CDS
T02657
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
dgi
Desulfoscipio gibsoniae
Pathway
dgi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Desgi_4318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dgi03400
]
Desgi_4318
DNA repair and recombination proteins [BR:
dgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desgi_4318
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Desgi_4318
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
DUF87
HEM4
UvrD-helicase
FlaG
Kinesin
AAA_16
nSTAND_NTPase5
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AGL03561
UniProt:
R4KVC9
LinkDB
All DBs
Position
complement(4407717..4409696)
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AA seq
659 aa
AA seq
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MQFELKSSYAPRGDQPRAINELVEGLGDGLKHQTLLGVTGSGKTYTMAQVIQRVQRPALV
LAHNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYIPHTDTYIEKDSSVNDEIDKL
RHSATCALFERRDVIIVASVSCIYGLGDPEQYSTLVLSLRRGAEYDRDAVLRRLVDIQYE
RNDVNFTRGTFRVRGDVVEIFPAGNSERAIRVDFFGDEIERLLEFDVLTGEITGERQHVS
VFPASHYAISRERMDIAVARIEEELERRLAELRGREKLLEAQRLEQRTRYDIEMMREMGF
CNGIENYSRHLTGREPGQPPYTLLDYFPDDFLMFIDESHVSIPQVRAMYAGDRSRKESLV
EHGFRLPSAFDNRPLTFEEFEERLGQVIYVSATPGPYEQEHSGQVVEQIIRPTGLVDPEL
FVRPTRGQIDDLIGEINQRVARQERVLITTLTKKMAEDLTDYLRESGIRVRYMHSEVHTI
ERMEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAA
RNVNGQVILYADKITDSMAKAIGETERRRKLQTEYNLVHGITPQTVRKAVHSVIEATRVT
ETPAVYNVAIDAKNGKLSKKEIKKLLTRLEKEMQEAARRLEFEQAAQLRDAIIELRGQA
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaattgaaatcctcctacgcgccccggggtgaccagccccgggcaattaat
gagctggtggaggggctcggtgacggactgaaacaccagaccttgctgggagtgaccggc
agcggcaagacctataccatggcccaggttattcagagggtgcagcggcccgcgctggtg
ctggcccataataaaacactggctgcccagttgtgcagtgagtttaaggagttttttccc
aataacgcggtggagtattttgtaagctattacgactattaccagcccgaggcatatatt
ccccacaccgacacttatattgaaaaagattcctctgttaacgacgagatcgataaactg
cgccactcggccacctgtgcgctgttcgagcgccgtgacgtgatcattgtggccagtgtg
tcctgcatatacggcctgggtgaccccgaacagtacagcactctggtgctctccttgcgc
cggggggcggaatatgaccgggacgccgtgctgcgccgtctggtggacattcagtacgag
cgcaacgatgtcaactttacccggggcaccttccgggtgcggggagatgtggtggaaata
ttcccggcgggcaattccgagcgggctatacgggtggacttttttggcgatgaaattgag
cgcctgctggaattcgatgtgcttaccggtgagatcaccggggagcggcagcacgtttcg
gttttcccggccagccactacgctatttcccgggaacgtatggatattgctgtggcccgt
attgaagaggaacttgaacggcgcctggccgagctgcgggggcgggaaaagctgctggag
gctcagcggctggagcagcgaaccaggtacgatatagaaatgatgcgggagatgggtttc
tgcaatggtattgaaaactattcccggcacctaaccgggcgggagcccggccagccgcca
tacacgctgctggattatttcccggatgactttttaatgtttattgatgaatcccatgtg
agcattccccaggtgcgggctatgtacgccggggaccgctcgcgcaaggaatcgctggtg
gagcatggttttcggctgccctcggccttcgataaccgtcccctcacctttgaggaattt
gaagaacggctgggccaggtaatttatgtatccgctacccccggcccctatgaacaggag
cacagcgggcaggtggtggagcagattatccgccccaccggcctggtggatcccgaattg
tttgtgcggcccacccggggccagattgatgatttaatcggcgaaatcaaccagcgagtg
gccaggcaggaacgggtgttaatcaccactttgaccaagaagatggccgaagaccttact
gattacctgcgggaatcgggcattcgggtgcgctatatgcactcggaggtgcatactatt
gagcgcatggaaattatccgggatctgcggttgggtacctttgacgtgctggtgggcatc
aacctgctgcgggagggcctggacttgcccgaggtgagcctggtggccatactggatgcc
gataaagagggctacctgcgctccgagcgctcgctgatccagaccatcggccgggctgcc
cgcaacgtcaacgggcaggtgatattgtatgccgacaaaatcaccgactctatggctaaa
gctatcggggaaaccgagcgccgccgcaagctgcagaccgaatataacctggtccacggt
attaccccccaaaccgtacgcaaagcggtgcatagtgttatcgaggccaccagggtgacc
gaaacaccggcggtttacaacgtcgctatagacgccaaaaacggcaagctgagtaaaaag
gaaattaaaaagctgctgacccgcctggagaaagaaatgcaggaagctgcccggcgcctg
gaattcgagcaggccgcccaacttcgcgacgccatcatcgagctgaggggtcaggcttaa
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