Deinococcus gobiensis: DGo_CA0976
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Entry
DGo_CA0976 CDS
T01827
Symbol
mfd
Name
(GenBank) Transcription factor CarD
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dgo
Deinococcus gobiensis
Pathway
dgo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DGo_CA0976 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dgo03400
]
DGo_CA0976 (mfd)
Enzymes [BR:
dgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DGo_CA0976 (mfd)
DNA repair and recombination proteins [BR:
dgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DGo_CA0976 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFD24903
UniProt:
H8GYX6
LinkDB
All DBs
Position
complement(1072015..1075155)
Genome browser
AA seq
1046 aa
AA seq
DB search
MTVAAPNLSKLLPPAPAGNLLQLPQVARAALFAAFPGPAVLLCTPERAATYASAGALGAP
VSVNPGLRDWDTRHEHVVLDVNTALDLFPSRPEDHALTLAVGRSLPREELLSRLEKLGYE
RGEEPGFELRGDTLELRLEPGAGLPQNAEEGLWIRAEFFGDEVDTLRQLAPGELTGEKIG
HFTLEPTTDYLSEVRWDATRLDLLPGRVFLDSPEFFASALGVLTDTLWPRLEGREVTVFG
RSPLELPDLDTGLQTLPFYRARLTDLERDVTEWRGAGYRVLILVRHDRTAAYLADKLLGT
HEIPWLNIPRVQEGGLGFLRAGGEGGFVIPEHKTVVLTEDLIYGFQGGSALRGKKLGGKP
VTDALGLQVGDYLIHPEHGIGQFQGLETRKVLGVTRDYLNLEYRGGARLSVPIEQLPVLR
RHPGTTDDPPVLSSFDKKDWAKAKEKARKNAEAVAAKLLVQYAARQVTPGNSFGAQPEWD
RQIEENFAFELTADQKTALKETFKDLEAANPADRLISGDVGFGKTEVALRAAHRVVGHGK
QVAILVPTTLLAEQHTSTFVERFRGLPVRVEGLSRFTSDKQSRAILGDLAQGKVDILIGT
HRLLSGDITFKDLGLIIVDEEHRFGVSQKEKLRALRGLPDTAGGKLEVPGDVTAVDTLAL
SATPIPRTLYMSMVGLRDMSSIQTPPKGRRPIQTVLTPFDPVTVRDAIMTEIGRGGKVFY
IHDRIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMMGFEQGAFDVLLSTTIVETG
LDIPEANTILIERADRLGLAQLYQLRGRVGRRAQTAYAYLFYPPRMTENAQRRLWAIADL
QDLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTELLAEAVARLKGEPVQAPPS
VSINLPVDARLSPEYFAGPDGREDEEARIATYGRLSEARTLQAVSRVERDLRKKYGPPTP
EVQNFIDLAKLRMTAVARRVLEIGETMTQLQITFAYKKLDYDAAGLKRFPHKTEVATFPP
SVKLEKRGIKPDDYARTLIDLLGYFG
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
gtgacggtcgccgcgcccaacctttccaaactgctgcccccggccccggccggcaatctg
ctgcaactgccgcaggtcgcccgcgccgcgctgttcgcggccttccccggtcccgccgtg
ctgctgtgtacccccgagcgcgcggcgacctacgcctcggccggcgcgctgggggcgccc
gtgagcgtgaatccgggcctgcgcgactgggacacccggcacgaacacgtcgtgctggac
gtgaacacggcgctcgacctctttccctcgcgccccgaggaccatgccctgacgctggcg
gtgggccgcagcctgccgcgcgaggagctgctgagccgcctggagaaactgggctacgag
cgcggtgaggaaccgggcttcgagctgcgcggcgacacgctggagctgcgcctggagccg
ggcgcgggcctgcctcagaatgccgaggagggcctatggatccgcgccgagttcttcggg
gacgaggtggacaccctgcgccagctcgcgcccggtgagctgaccggcgagaagatcggg
cacttcacgctggagcccaccaccgactacctcagcgaggtccggtgggacgccacccgg
ctcgacctcctgccggggcgcgtctttctcgactcgccggagttcttcgcgtcggcgctg
ggggtcctgaccgatacgctgtggccgcgcctggagggccgcgaggtcacggtgttcggc
cgctcgccgctggaactgcccgacctcgacaccggcctccagaccctgcccttctaccgc
gcccgcctgaccgacctggaacgcgacgtgaccgagtggcgcggcgcgggctaccgcgtg
ctgatcctggtgcgtcacgaccgcaccgccgcctacctggccgacaagctgctcggcacc
cacgagattccctggctgaacattccgcgtgtgcaggagggcggcctgggcttcctgcgg
gcgggcggcgagggcggcttcgtcattcccgagcacaagacggtggtgctcaccgaagac
ctgatctacggcttccagggcggctcggcgctgcgcggcaagaagctcgggggcaagccg
gtcaccgacgcgctgggcttgcaggtgggcgactacctcattcatcccgagcacggcatc
gggcagttccaggggctggagacgcgcaaggtgctgggggtcacgcgcgactacctgaac
ctcgaataccggggcggcgcgcgcctgagcgtgcccatcgagcagctgccggtactgcgg
cgccaccccggcaccaccgacgacccgccggtcctgagcagcttcgacaagaaggactgg
gccaaggccaaggaaaaggcccgcaagaacgccgaggcggtcgccgccaaactgctcgtg
cagtacgccgcgcggcaggtcacgccgggcaacagcttcggggcgcagcccgagtgggac
aggcagatcgaggagaatttcgccttcgagctgacggccgaccagaaaaccgccctcaag
gagaccttcaaggacctggaggccgccaaccccgccgaccgcctgatctcgggcgacgtg
ggcttcggcaagaccgaggtggcgctgcgggccgcacaccgcgtcgtcgggcacggcaag
caggtcgccatcctggtgccgaccacgctgctggccgagcagcacacctcgaccttcgtc
gaacgcttccggggcctgccggtgcgcgtcgagggcctgtcgcgcttcacgagcgacaag
cagtcgcgcgccatcctgggcgacctcgcgcagggcaaggtggacatcctgatcggcacg
caccgcctgctctcgggcgacatcaccttcaaggacctgggcctgatcatcgtggacgag
gaacaccgcttcggggtatcgcagaaggaaaagctgcgggcgctgcgcggcctgcccgac
acggcgggcggcaaactggaagtgccgggagacgtgacggcggtggacacgctggccctc
tcggccacgcccattccgcgcacgctgtacatgagcatggtgggcctgcgcgacatgagc
agcatccagacgccgcccaagggccgccggcccatccagacggtcctgacgccgtttgac
cccgtcaccgtgcgcgacgcgatcatgaccgagatcgggcgcggcgggaaggtcttctac
atccacgaccgcatcgcctccatcggcgcccgcagcctgtacctgcgcaacctcgtgccc
gaggcgcgcatcggggtggcgcacggccgcatgaacgaggaggaactcgaagagatcatg
atgggcttcgagcagggggccttcgacgtgctgctctcgacgaccatcgtcgagacgggc
ctggacatccccgaggcgaacaccatcctgatcgagcgggccgaccgcctgggtctcgcg
cagctctatcagctccgggggcgcgtggggcgccgggcgcagacggcctacgcctacctg
ttctacccgccgcgcatgaccgagaacgcgcagcggcggctgtgggccatcgcggacctg
caagacctcggctccgggcacctgctggccgagaaggacatggagatccgcggtgtgggc
aacatcctgggcgaggagcagcacgggcacgtgcaggccgtgagcatcgacgtgtacacc
gagctgctggccgaagcggtcgcgcgcctcaagggcgagccggtgcaggctccgcccagc
gtgtccatcaacctgccggtggacgcgcggctctcgcccgaatatttcgccggacccgac
ggccgcgaggacgaggaggcgcgcatcgccacctacggccgactctccgaggcgcggacc
ctccaggccgtctcgcgcgtcgagcgcgacctgcgcaagaagtacgggccgcccaccccg
gaggtccagaatttcatcgacctcgccaagctgcgcatgacggccgtcgcccggcgcgtg
ctggagatcggcgagacgatgacgcagctccagatcaccttcgcgtacaagaagctcgac
tacgacgcggcgggcctcaagcgcttcccgcacaagaccgaggtggcgaccttcccgccc
tcggtgaagctggagaagcgcggcatcaaacccgacgactacgcccgcaccctgatcgac
ctgctggggtatttcgggtaa
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