Drosophila grimshawi: 6566498
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Entry
6566498 CDS
T01061
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dgr
Drosophila grimshawi
Pathway
dgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6566498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgr03019
]
6566498
03041 Spliceosome [BR:
dgr03041
]
6566498
03009 Ribosome biogenesis [BR:
dgr03009
]
6566498
03016 Transfer RNA biogenesis [BR:
dgr03016
]
6566498
Enzymes [BR:
dgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6566498
Messenger RNA biogenesis [BR:
dgr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
6566498
Spliceosome [BR:
dgr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
6566498
Complex C
U4/U6.U5 tri-SnRNP related factors
6566498
Ribosome biogenesis [BR:
dgr03009
]
Eukaryotic type
Pre-60S particles
Helicases
6566498
Transfer RNA biogenesis [BR:
dgr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
6566498
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
6566498
NCBI-ProteinID:
XP_001992832
UniProt:
B4JPC7
LinkDB
All DBs
Position
Unknown
AA seq
1067 aa
AA seq
DB search
MDIDELFDCFNEVPPESLQVPPLPMQSKKATAVEVLDNDNKSAKKANKRQADASVADQQT
EADEASVKEDKEEKEPAKRPRADGVGDESDDNDKEMCNEKEEEEEENVQQPDDFAMEALR
VRIVTHQLVSPESCTHEVAAHPDQEYIPLQPIVGVPAKEYPFVLDPFQKQAILCIDNSQS
VLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFQDVGLVTGDV
TINPSASCLIMTTEILRNMLYRGSEVMREVGWVVFDEIHYMRDKERGVVWEETLILLPDN
VRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKG
QFKEDNFTTAMAVLANAGEAAKGDQKGRKGGVKGHNSGQTNIFKIVKMIMERNFAPVIIF
SFSKKDCEVYAMQMAKLDFNTVDEKKLVDEVFHNAMDVLSEEDRRLPQVENVLPLLRRGI
GIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWI
SSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPVVGREIVQGKADTLNSAFHLTYNMVLN
LLRVEEINPEYMLERSFYQFQNQAALPGLHDQVQQKQQQLEKLSIKDEHNIASYHHIRDQ
LEINGTKFREWLTKPQYLVPFLQPGRLVKVSAGKQEYDWGIVLNFKKQDQSRKNPLKSDP
NVVIDVLLHVSEEAAKTGDTEPCPLNERGCMEVVPVANTLLTQISSIRVYFPSDLRTADN
RRAVLKTIQEAKKRFPLGPPVLHPVDDMNIKDAEFRKIVDTIAQFERLLEEHPLHKSPEL
ERIHKRYLDKLKLQSELSALKTELKAARSLLQMDELKYRKRVLRRMGYCKPGDVIEFKGR
VACELSSADELLITEMIFNGVFNELSAPQAVALLSCFVCDEKSSEAPKSATELSGPLRAL
QNLARRIAKVSTECKLNLDEDNYVEKFKPFLMDVVLAWCKGSTFLSVCKMTDIFEGSIIR
CMRRLEELLRQLCQASKTIGNTDLENKFSEGIRLIKRDIVFAASLYL
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atggacatcgacgagctatttgattgtttcaatgaggtgccacccgaaagtctgcaggtg
ccgccgctacctatgcaatcaaagaaggcaacagcagttgaagttctggacaatgacaac
aaaagtgccaaaaaagccaacaagcgtcaggcagacgccagtgttgctgatcaacagaca
gaagcagatgaagcatctgtgaaagaggacaaagaggagaaggagcccgcaaagcgcccg
cgtgccgacggcgttggcgatgaatcggatgacaatgacaaggaaatgtgcaacgagaag
gaggaggaggaggaggagaacgttcagcagccagatgattttgcgatggaggcgctgcgc
gtgaggattgtgacccaccaattggtgtcgccggagtcgtgcacacacgaggtggctgcc
catcccgatcaggagtacatcccattgcagccaattgtgggagtgcccgccaaagagtat
ccatttgtgttggatccatttcagaagcaggccattctctgcatcgacaactcccagagt
gttctagtgtcggcgcacacatccgccggtaaaacggtggttgccgaatatgccatcgcc
aagtcactggcggcaaagcaacgagtgatttatacgactcccattaaggcgttgtccaat
caaaagtttcgcgaattcacagatgaatttcaggatgttggtttagttactggagatgtg
accattaatccatcagcctcttgcctgatcatgaccacagagattctgcgtaatatgctg
tatcgtggcagcgaggtgatgcgtgaggtgggctgggtcgtcttcgatgagattcactat
atgcgcgacaaggaacgtggcgttgtctgggaggagacgctgatcctgctgccggataat
gtgcgctatgttttcctctcggcaacgatacccaatgctcgccagtttgccgagtgggtc
tgccatctgcacaagcagccgtgtcacgttgtctatacggattatcggcccacaccgttg
cagcattacatctttccagctggcggcgatggcattcatttgattgtcgacgagaagggt
cagttcaaggaggacaatttcaccacagccatggcggtgctggccaatgcgggcgaggcg
gccaaaggtgatcaaaagggacgcaagggtggcgtcaagggtcacaattctggtcagaca
aacatctttaagattgtcaagatgatcatggagcgtaactttgcaccagtcatcatcttt
tcattcagtaagaaggattgcgaggtgtatgccatgcaaatggccaaactggattttaat
accgtggatgagaagaaactggtcgatgaggtctttcacaatgcgatggatgtgctctct
gaggaggatcgtcgtctgccgcaggtggagaatgtgttgccactactgcgacgtggcatt
ggcatacatcatggcggtctgttgcccatccttaaggagaccattgagatactgttcgga
gagggattgattaaggctctgttcgccacggaaaccttcgccatgggcctgaacatgccg
gcgcgcactgtactctttacggcaccacgtaaatttgatggcaaggactttcgctggatc
agctccggggagtatatacaaatggctggacgtgctggacgtcgtggccttgatgacaag
ggtattgtcatactgatgatcgatgagaaggtgtcgcccgtcgtgggacgtgagatcgtg
cagggcaaggctgacacattaaattcggctttccatttgacgtacaacatggtgttgaat
ctgctgcgtgtggaggaaatcaatccggaatatatgctggagcgcagtttctatcagttc
cagaatcaggctgcattgcctggactgcacgatcaggtgcagcagaagcagcaacagctg
gagaagctgagcatcaaggatgagcacaacattgcctcgtatcatcacatccgggatcag
ctcgagatcaacggcaccaagttccgtgagtggctgacgaagccacaatatctggtgccc
ttcctgcagccgggtcgcctcgtcaaggtctcggctggcaagcaggaatacgactggggc
attgtgttgaatttcaagaaacaggatcagagtcgcaagaatccgctgaagagtgatccg
aacgttgtcatcgatgtgctgctgcacgttagcgaggaggcggccaaaactggcgacact
gaaccctgtcctctaaacgaacgcggctgcatggaggttgtgcccgtcgccaatacactg
ctcacccagattagctcgatacgcgtctattttcccagtgatctgcgcacagctgacaat
cgtcgtgccgtcctcaagaccattcaggaggcaaagaaacgctttccgctcggtccaccc
gtcctgcatcccgtcgacgacatgaacatcaaggatgctgagttccgtaagatagtggat
accattgcccagttcgagagactgctcgaggagcatccactgcacaaatcacccgagttg
gagcgcatacacaaacgctacctggacaagctgaagctacaatcggagctgagtgcgctg
aagaccgaactgaaggcggcacgcagcctgctccaaatggacgagttgaagtatcggaag
cgtgtgctccggcgcatgggctactgcaagcccggcgatgtcatcgagttcaagggtcgc
gtcgcctgcgagctgagctcagcggatgagttactcattaccgaaatgatcttcaatggt
gtcttcaatgagctctcagcaccacaggctgtggcactcctctcctgcttcgtctgcgac
gagaagtccagcgaggcgccaaagagtgcgacggagttgtcgggaccacttcgcgccctg
cagaatctggcgcggcgcatcgcaaaggtgtccaccgagtgcaaactgaatctggatgag
gacaactatgtggagaaatttaagccatttctcatggacgtggtgctcgcctggtgcaag
ggctccactttcctgagcgtctgtaaaatgaccgacatctttgagggctccatcattcgt
tgcatgcgtcgtctcgaggagctgctgcgtcaactgtgccaggcatccaagacgattggc
aatacggatctggagaacaagttctccgagggcatccgactgatcaagcgcgatattgtg
tttgccgcctcgctgtatctgtag
DBGET
integrated database retrieval system
