Drosophila grimshawi: 6567593
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Entry
6567593 CDS
T01061
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dgr
Drosophila grimshawi
Pathway
dgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
6567593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgr03019
]
6567593
Enzymes [BR:
dgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
6567593
Messenger RNA biogenesis [BR:
dgr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
6567593
mRNA degradation factors
3'-5' decay
Ski complex
6567593
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
ResIII
Helicase_C
MTR4-like_stalk
RhopH3_C
Motif
Other DBs
NCBI-GeneID:
6567593
NCBI-ProteinID:
XP_001994254
UniProt:
B4JTA0
LinkDB
All DBs
Position
Unknown
AA seq
1194 aa
AA seq
DB search
MNINIIDEENHQKLRDYILNPDISIHDPLPDVLPRKFNEMRLLHIPKCSGSTKLIPRRDW
VTGEIAEFVEVAVEEVGANANNSMSMQREPGLLEEITRGSHMNYPFWPGGFAMDQPTELA
QLEVDNFQLGDKLLTVPPGFASGHDFSLAKTKPEEESVPATSNVDLLENLQEDLDVQQWL
QITRSDSQNDSTKATQRDLQFSAEFQDVDDEIMNADLKPVLNISTTAKTFSSDWAEMVDI
SQPITNFKEQIPSPAMEFPFELDEFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAIALS
KRDLTRTIYTSPIKALSNQKYRDFRKTFKDVGLLTGDLQIEPTASCLIMTTEILRSMLFC
GSDITRDLEYVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGS
TKKRKVYVISTLKRPVPLMHYLYTGAGGKSRDDIFLLVDAQGKYLQGNYEKAVERKKEMQ
GKSKGGGPKNYVSGKQDQSTWIGMIDFLKRNNKMPVVAFTLSRNRCDANVAALQSVDLNT
EKEKGAVQKFFLQCLAKLKPPDRTIPQVMTLKDALERGIGVHHSGILPILKEIVEMLFQN
GLVKLLFATETFAMGVNMPARTVIFDSYKKFDGIEMRILKPGEYIQMAGRAGRRGHDENG
TVILMCKASVPPSMELRPMILGLPEKLQSQFILRYAVILICLRIESIKVEDIMKFSFKEF
NLKLQLPTQQKQLQLAEDKFAMLPTLGKHLEPLIYFCDKSVEYWKEKHRIMKFIVTQAKI
QKELKVGRIIVITQGKHYNKLAILLNVKSVLGKDTIYKVLVLDHQFKSSDSDIVDRGEFY
YKILSLTPQNKFFQPEGIGGHTVLDIKAIDIINITKSTIKLDADVIIRNWEQRQLERFKD
SPPGATVVKAVTELHQLNEAYNANPDSIKYINMSKEINVKADSEVAMLHYVDHLKRQLDD
VLPHTNIAGFEQEFAKVYERRVLEIHIEELKFKNSAKNLTLYPDYCNKLQVLRALNYIDE
LNEVTLKGKVACEMGQNELLITELILCNMFNDLEPAEIAALLSGLVFQAKIQGEPFIPEP
LKKCVAAFEQINDTILAEEQRCQASIQAESNLNFGLLEVVYEWAKNKPFAEIMKLTEVQE
GIIVRCIQQLDETLRDVKTAAIRIGNPGLQSKMEEASAAIKRDIVFTASLYTEI
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcaatattatcgacgaggagaatcatcagaagctgcgcgattacatattaaac
ccagatatatccattcatgatccactgcccgatgtgttgccgcgcaaattcaatgagatg
cgcctgttgcacattcccaaatgttccggcagcaccaagctgattccacgtagggattgg
gttacaggggaaattgcagagtttgttgaagtcgcagtggaggaggtgggcgccaatgct
aacaactccatgtccatgcagcgagaaccgggtctgctggaagagataacgcgcggctcc
cacatgaactatcccttctggccgggaggctttgccatggatcagcccacagagctagcc
cagctagaggtggacaactttcaattgggtgacaagctgctaacagtgccgcctggcttt
gccagcggtcacgacttctcgctggccaaaacgaagcccgaggaggagagtgttcccgcc
accagcaatgtagatctgctcgagaatttgcaggaagatctcgatgtgcagcagtggctg
cagattacgcgcagcgacagccaaaacgattcaacaaaagctacacaacgggatctgcag
ttttcggccgaattccaagatgtggacgatgagattatgaatgcggatctgaaaccagtg
ctgaacatatcgacgacggcgaaaacctttagcagcgactgggcagagatggtggacatt
agccagccgattaccaacttcaaggagcagatacccagcccagccatggagtttcccttc
gagctcgacgagttccagaagcaggccatactcaagctggagcagcgccaatatgtcttc
gtcgcggcccacacgtcggcgggcaagactgtggtggcggagtatgccattgcgctgtca
aagcgggatctgacccgcaccatttacacgtcgccgatcaaggcactgtccaatcaaaag
tatcgcgactttcgcaaaacgttcaaggatgtgggcttactcacgggcgatctgcagatc
gaaccgacagcctcgtgcctaatcatgaccaccgaaattctgcgctccatgcttttctgt
ggcagcgatataacccgtgatctggagtacgtcatcttcgatgaggtgcactatattaac
aatccggagcgcggtcatgtctgggaggaggtcatcatactactgcccgatcatgtcaac
attatcatgttgagcgccaccgtaccgaacaccatggagctggccgattgggtgggcagc
accaagaagcgcaaggtgtatgtgatcagcacactgaagcgtccggtgccactgatgcat
tacctctacactggcgcggggggcaagagtcgagatgacatatttctgctggttgatgcc
cagggtaaatatctgcagggcaactacgagaaagccgtggagcgcaaaaaggagatgcag
ggcaaatcgaaggggggcggacccaagaactatgtcagcggcaagcaggatcagagcact
tggattggcatgatcgattttctcaagcgcaacaacaagatgcccgtggtggccttcacc
ctatcccgcaatcgttgcgatgccaatgtggctgccttgcagtccgtcgatctcaatacg
gagaaggagaagggcgccgtgcagaagttctttctgcagtgtctggcgaaattgaagccg
ccggatcgcactattccccaagtgatgacgttgaaggacgcactagagcgtggcatcggg
gtgcatcacagcggcattttgcccatactcaaggagattgtcgagatgcttttccagaac
ggactcgttaaactgctctttgccaccgaaaccttcgccatgggcgtcaacatgcccgcc
cgcaccgtcatctttgattcgtacaagaagttcgatggcatcgaaatgcgcattctgaag
ccgggcgagtacatacagatggcggggcgagcaggaaggcgtggccatgatgagaacggc
acggttatactcatgtgcaaggcgagcgtgccgccatcgatggaactgcgtcccatgatc
cttggcctgcccgagaagctgcaatcgcaattcattctacgttacgccgttatcttgatc
tgcctgcgcatcgagagcattaaggtggaggacattatgaagttcagcttcaaggaattc
aatctgaaactacagctgcccacgcaacagaagcagctccaactggccgaggataagttc
gcaatgcttcccacactgggtaagcatctggagccgctgatctacttctgcgacaagtcc
gtggagtactggaaggaaaagcatcgtattatgaaattcatcgtaactcaggcgaaaatc
caaaaggaattgaaagttggtcgcatcattgttatcacgcaaggcaagcactacaacaag
ctggccattttgctcaatgtgaagtccgtgctgggcaaggacaccatctacaaggtgctg
gtgctggaccatcagttcaagagcagcgatagcgacattgtggatcgtggcgagttctat
tacaaaatactctctttgacgccacagaataagttcttccagccggaaggcattggcgga
cacacggtgctcgatatcaaagcaatcgatataatcaacattaccaagtcgacaattaag
ctggatgccgatgtcatcatacgcaactgggagcagcgacagttggagcgcttcaaggat
agcccgcccggtgcaaccgtcgtaaaggccgtcacggagttgcatcaactaaatgaggcg
tacaatgccaatccggatagcattaagtatatcaacatgtccaaggagatcaatgttaaa
gcagatagtgaagtggccatgctgcactatgtggatcatctgaaacgacagctggatgat
gtcctgccgcacaccaatattgccggctttgagcaggagtttgccaaggtctatgagcga
cgtgtgctcgagattcatatcgaggagctgaaattcaagaactctgcaaagaatttaaca
ctatatccggattactgcaacaagctgcaagtgttgcgcgctttgaactacatcgatgag
ctgaacgaggtgacgctcaaggggaaggtggcctgtgagatgggccagaacgagctgctg
atcaccgagctgatactctgcaatatgttcaacgatctggagccggcggaaatagctgcg
ctgttatccggtctggtgttccaggccaaaattcagggcgagcccttcatcccagagccg
ctgaagaagtgtgttgccgccttcgagcaaatcaatgataccatcttggccgaggagcaa
cgctgccaagcatcaattcaggctgagagtaaccttaactttggactgctcgaagtcgtc
tatgagtgggccaagaacaagccctttgccgagatcatgaagctgaccgaggtgcaggaa
ggcatcatagtgcgctgcatacaacagttggatgaaacactacgcgatgtcaaaactgcg
gccatacgcattggcaatccgggcttgcagtccaaaatggaagaggcctccgcggccata
aagcgtgatatcgtctttacagccagtttgtacacggaaatatga
DBGET
integrated database retrieval system
