Dendronephthya gigantea (soft corals): 114515754
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Entry
114515754 CDS
T06112
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114515754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dgt03041
]
114515754
03009 Ribosome biogenesis [BR:
dgt03009
]
114515754
Enzymes [BR:
dgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114515754
Spliceosome [BR:
dgt03041
]
Complex A
U2 snRNP components
U2 related factors
114515754
Complex B
114515754
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
114515754
Ribosome biogenesis [BR:
dgt03009
]
Eukaryotic type
90S particles
Helicases
114515754
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
Flavi_DEAD
ABC_tran
TsaE
Microtub_bd
AAA_7
ATPase
PhoH
AAA_30
T2SSE
AAA_29
Motif
Other DBs
NCBI-GeneID:
114515754
NCBI-ProteinID:
XP_028390847
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MSKRRLDVDDVKKSKEMADFENLKLKIKLNPHSGRPYTDRYYEILKKRLQLPVWEYKERF
MDMLDKNQCIVLVGETGSGKTTQIPQWCVEGRKDQRKGVACTQPRRVAAMSVAQRVADEM
DVIIGQEVGYSIRFEDCTSARTVMKYMTDGMLLREAMTDPLLDKYDCILLDEAHERTLAT
DILMGLLKEVVAQRKDIRVVVMSATLDAGKFQEYFNNCPLLNVPGRTHPVEIFYTPEPER
DYLEAAIRTVVQIHMCEEVEGDLLLFLTGQEEIEEACKRIRKEIDNLGGEVGELKCIPLY
STLPPQLQQRIFESAPENRPNGAISRKIVVSTNIAETSLTIDGVVFVIDPGFSKQKVYNP
RIRVESLLVSAISKASAQQRAGRAGRTKPGKCFRLYTEKAFQTEMQDNTYPEILRSNLGT
VVLHLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDNGDLTELGSMMAEFPLDP
QLAKMVIASCEFNCSNEILSITAMLSVPQCFLRPNEAKKAADEAKMKFAHIDGDHLTLLN
VYHAFKQNHEDSQWCYDNFVQFRSLKSADSVRDQLVRIMDRFNLARRSTDFNSKDYYINI
RKALVSGFFMQVAHLERSGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRT
CTEVKPEWLVKVAPQYYDMRNFPNCEARRILERVIERLMKGR
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcgaaggcttgatgtcgacgatgttaagaaatcgaaagagatggctgatttt
gaaaatctgaagttaaaaattaaacttaatccacattctggccggccctacacagataga
tattatgaaatccttaagaaacgtcttcagttgccggtgtgggaatataaagaaaggttt
atggatatgctagataaaaatcaatgcatagtcttagttggtgaaacagggtctgggaag
acaacacagattcctcaatggtgtgtggaaggcagaaaagatcagcggaaaggtgtagct
tgcacacaacccagaagagtggcagccatgagtgttgcacaacgtgttgcagatgaaatg
gatgtcattattggccaagaagttggatacagcattcgatttgaagattgtacaagtgct
agaacagtcatgaaatatatgactgatggtatgcttcttcgagaagcaatgactgatcca
ctgttggataaatatgactgtattttgcttgatgaagctcacgagagaactttggcaaca
gatatactcatgggattactgaaagaggttgttgcacaaagaaaagacatcagagtagtc
gtcatgagtgccacacttgatgctggcaagtttcaagaatacttcaacaattgtccatta
ttgaatgttcctggacgtacacatcctgtcgagatcttctacacaccagaacctgaacga
gactatcttgaggcagccatacgaactgttgtacagattcacatgtgtgaagaagtcgag
ggtgatttattgcttttcctcactggtcaagaggaaattgaggaagcttgcaaacgtatc
cgaaaagaaatagataatcttggtggggaagttggggaattaaagtgtatcccactgtac
tccacattacccccccagctacaacaacgcattttcgaatcagccccagagaatcgtcca
aatggtgcaataagtcgcaagattgttgtctcaaccaatattgcagagacatcattgact
attgacggtgttgtctttgttattgacccaggattttctaaacaaaaggtttacaatcct
cgtatccgagtggaatccttgcttgtgtctgctatttccaaagcaagcgcccagcaacgg
gcaggaagagctggtcgaacaaaacctggcaaatgttttcgtttgtacacggagaaagct
ttccaaacagagatgcaagacaacacgtatcctgaaatattgagatcaaatcttgggacg
gttgttttacatcttaaaaaacttggaattgacgatcttgtgcattttgattttatggat
ccgcctgcgccagagacgctgatgagagccctggaattgttgaattatctcggtgcgttg
gacgacaatggtgatttgacggagcttggttcaatgatggctgagtttccactggatcct
caacttgccaagatggtcatcgcaagttgtgaattcaactgctccaacgagattctctct
ataacagccatgttatcagttccacaatgtttccttcgtccaaacgaggctaaaaaggcg
gcagacgaggctaagatgaagttcgctcatattgacggagatcatctgacgcttcttaat
gtttaccacgctttcaaacaaaatcacgaggattcgcaatggtgttacgataacttcgtg
cagttccgttcgctgaagtcagccgacagtgtccgagatcaactcgttcgaatcatggat
cgtttcaatcttgcccgacgtagcacagacttcaacagcaaagattattatataaacata
agaaaagcacttgtatctggattttttatgcaggttgcgcatcttgagaggtctggccac
tacttgacagtcaaggacaaccaggttgtacaactccacccgtctactgtgttagaccat
aaacctgaatgggtgttgtacaacgagtttgttcttacaacgaagaattacatcagaact
tgtaccgaagttaaacccgagtggctagtgaaggtggccccacagtattacgacatgagg
aatttcccgaattgcgaggcaaggaggatcttagaacgtgttattgaaagactcatgaaa
ggacgttaa
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