Dendronephthya gigantea (soft corals): 114517124
Help
Entry
114517124 CDS
T06112
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114517124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dgt03041
]
114517124
Enzymes [BR:
dgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114517124
Spliceosome [BR:
dgt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114517124
Complex C
U4/U6.U5 tri-SnRNP related factors
114517124
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
PWI
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
114517124
NCBI-ProteinID:
XP_028392576
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MALNTWVSDRLHDILGFSDKHTVEYLVSLSRSTKSSESFRDKLESFLGALDGQISNFAND
LWQRVPHQEAGENPNRAREREIVAEQKRNMAYRMLSDDDDEDDEEMAAKTKSAERRTAKR
RKHLRKKAEMSESSEEDAAEVKETAADSEDEWERSEKERMKDQEERDAFSARLKEKDKEK
QRNVMERSEKKAYEEAKKRLNLDEEDRKKMLPKLREKSRRDYVKKRQVDQIDMLQGDIQD
DEYLFGDFNLSKREKKEIEYKKTVLNLAKDYKKAGELEKVDRYSMPKEGTKPSKYDDEVI
MEELGPNYEQKQWEEDKLVQAKMKFGAKDAKSKNKVKDYDLMVEEEEQIAFVLAENVPGT
VINNKEPELSEHQKKRMTIEETRKSLPIFAYRQSLLDAIRDHQVLIIEGETGSGKTTQIP
QYLYEDGYTAKKLKIGCTQPRRVAAMSVAARVSEEIGTKLGNEVGYSIRFEDCCSERTII
KYMTDGMLLREFLGEPDLASYSVMIIDEAHERTLHTDVLFGLVKDIARFRPTLKLLISSA
TLDADKFSSFFDDAPIFRIPGRRFPVDIYYTKAPEADYLDAVVVSVLQIHLTQPDGDILV
FLTGQEEIEASFEILTERTRKLGSKIKELLILPIYANLPSDMQAKIFEPTPPGARKVVLA
TNIAETSLTIDGIIYVIDPGFCKQKSYNPRTGMESLVVTPISKASANQRAGRAGRVAAGK
CFRLYTAWAYKNELEENTIPEIQRTNLGNVVLLLKSLGINDLIHFDFMDPPPAETLILAL
EQLYALGALNHHGELTKLGRRMAEFPVDPMMSKALIASEKYSCTDQILTIAAMLSVNNAI
FYRPKDKAVHADNARKNFFRPGGDHLTLLNVYEQWAETNYSTQWCYENFIQHRSMKRARD
VRDQLEGLMERVEIEITSNPHDSIAVRKAFTAGFFYHTAHLGKGGQYKTVKHQQMIHLSS
LFEDKPRWLIYHELVFTTKEFMRQVFEIENTWLLEVAPHYYKAKEIEDSTSHKMPKKIGA
TKEQLQT
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgaacacttgggtttctgacagacttcacgatattcttggtttctccgataaa
catactgtcgagtaccttgtcagtttgagcagaagcactaaatcttcagaatcatttcgc
gataaactcgaaagctttcttggtgccttggacggtcaaatctcaaactttgcaaatgat
ttgtggcagcgtgtgccccatcaagaggcgggagagaaccccaatcgtgctcgcgagaga
gaaatcgttgcagaacagaagcgaaatatggcatatcgcatgttatccgatgatgatgac
gaagatgatgaagaaatggcggcaaaaacgaagtcggccgaacgaaggacggcgaagcga
cgaaagcatttacgaaagaaagcggaaatgtccgagtccagcgaggaagacgccgctgaa
gtgaaggaaactgctgcagattcggaagacgaatgggagaggagcgaaaaggagagaatg
aaagatcaggaagaaagagacgcattctcagcacggttgaaagaaaaggataaagagaaa
caaaggaatgtgatggaacgatcagagaagaaggcatatgaggaagccaagaaaagacta
aatttggacgaagaagatcgtaaaaaaatgcttccaaagcttcgtgagaaatcgaggcga
gattatgtgaaaaaacgtcaggtggatcagattgatatgcttcaaggagacattcaagat
gacgagtatctctttggcgacttcaatttgagcaaacgagagaagaaggaaattgaatac
aagaaaaccgtgcttaacttagccaaggattacaagaaggccggtgaactagagaaggtt
gatcgatactccatgccgaaggagggaacgaagccatcaaaatacgacgacgaagtcatc
atggaagaactcggtcccaattatgagcagaagcaatgggaggaagacaagcttgtgcag
gctaagatgaaatttggtgccaaagatgctaaatctaagaataaggtgaaagattatgat
ttgatggtggaggaagaagaacaaatcgcgtttgttttggcagaaaatgttcctggcact
gttattaataataaggaacctgagttatcggagcatcagaagaaacgaatgacgatagag
gagacaagaaaaagtttgccaatatttgcataccggcaaagcttattggacgccataaga
gaccatcaggttttgattatcgaaggtgaaaccggatcaggaaagaccactcagatccct
cagtatctttatgaggatggttataccgcaaagaaactcaagattggttgtacccaacca
agacgagttgctgccatgagcgttgctgcgagagtctctgaggagattggaaccaagtta
gggaacgaggttggctacagcattagatttgaagattgctgttctgagcgaacaattatc
aagtatatgaccgacggaatgttactaagggaattccttggggaacctgatcttgcaagc
tacagcgtgatgattatcgacgaagctcatgaaaggacacttcacacggatgttttattc
ggtctggtcaaagacatcgctcgtttcagaccaacgctgaaattgctcatctccagcgcg
actttggacgcggataaattctccagctttttcgacgatgctccgatatttcgtattcca
ggtcgacgttttcctgttgatatttactacactaaggccccagaagctgattacctggac
gcggttgtggtgagcgttctgcaaattcatctcactcagccagacggcgatattttggtg
tttctcactggacaagaagagatcgaagcgtcgtttgaaattctgaccgagcggacgagg
aaactaggctctaagataaaggagttacttattcttccaatctatgcaaatctaccttca
gatatgcaagcgaagatatttgaacccaccccacccggggctaggaaggttgtcttggca
acgaatatagcggagacctcgctaaccatcgacggaattatttatgtgattgaccctgga
ttttgcaagcaaaagagttacaaccccaggacaggcatggagtctttggtggtcacgccc
atctcgaaggcttcagctaatcagcgcgctggccgtgcaggccgcgttgcagctgggaaa
tgttttcgtctctacacagcctgggcatacaagaatgaactggaagaaaatacgatccct
gagattcagagaacaaatctcggaaatgtcgtgttgttgttgaaaagtcttggaattaat
gatctgattcattttgatttcatggatcctccaccagcggaaacgttgattttagctctg
gagcagttgtacgctttaggagcgttgaatcatcacggagaactgactaagcttggccgc
agaatggctgagtttccagtggacccaatgatgtcaaaagcacttatcgcatcagaaaaa
tattcctgtactgatcagattctgacaatcgccgcaatgctgtctgtaaacaacgcgata
ttttaccgccccaaagacaaggcagttcatgctgacaatgcaagaaagaacttcttccgt
ccagggggtgaccacctcactttactgaacgtgtacgagcagtgggctgagaccaactat
tcgacacaatggtgctatgagaacttcatacaacacaggtcgatgaaacgtgccagggat
gttagagatcagttggaagggttgatggaaagagttgaaattgaaatcacttcaaatcct
cacgattccattgccgtgcggaaggcgtttactgcaggatttttctaccacaccgcccac
ctggggaagggcggtcaatacaaaactgtgaaacatcaacagatgattcatctaagcagt
ctatttgaagacaagcctcgctggttaatttatcacgaactcgttttcacaaccaaggaa
tttatgagacaggtatttgaaattgagaacacgtggctactggaagtggctccacattat
tacaaagcgaaagaaatagaggacagcacaagtcacaagatgcctaagaagatcggggca
acaaaagaacaactacaaacgtga
DBGET
integrated database retrieval system
