Dendronephthya gigantea (soft corals): 114518224
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Entry
114518224 CDS
T06112
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114518224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgt03019
]
114518224
Messenger RNA biogenesis [BR:
dgt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114518224
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_IFT140_1st
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_SPT8
PEP5_VPS11_N
WD_LRWD1
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
114518224
NCBI-ProteinID:
XP_028393984
LinkDB
All DBs
Position
Unknown
AA seq
1385 aa
AA seq
DB search
MMYVDPTSQYKFVAKTAANLPGLEASSTITNIANDAATVPTTESTSPTTVQAPPNTATHF
QAPEHAQKQAVLLQNAGVVGTVQSGQIPPAAAAQLAQGVAAGIPGQGLTYDGKRMRKTMQ
RRTVDYNSSVIRFLESRKWFKSSRNQHTLQPQEIYNVDIVPPCGYIKNPMNAVTTKFVRT
STNKLRCPIFCVVWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDRAVRSMVWSNND
LWLLTGDHGGFVKYWQSNMNNVKMYEAHKEPVRGLSFSPSDNKFASCSDDGLVKVWDFYR
CIEERELKGHGADVKCVDWHPTKGLIVSGSKDSQQPVKLWDPKTGNSITTLHCHKSTVMT
AKWNKNGNWLVTGSRDHLLKLFDIRMMKELQTFRGHKKEATVVAWHPVHETLFASGGSDG
SLMFWLTGVDEKAGTMDKAHEGIVWSLSWHPLGHILCSGSNDHTSKFWARNRPGDTMIDK
YNLDIQGSQEDGDFTSEEGTSHASVPALAAYDASQVIPGVGLPVTASNVVLPDSRDVDAH
LYGESGKDKMAVGKPSTATSSELPYPPAFSRSNFENRFGIPGLDMPNANIQIKQENDGYK
ISNLREPPKLRLPTRLPIPPNQSHYPPSGIRPPLTNHPGNHPPFGPRHGFDFRGPSGPRI
GDPNANFGPAGSFPPNQYARFPGPRGGMHEGPRGGFGAQRGPHPGPWSGPHHASRGGPFE
PYGPQGGPNPQNKPPNNYGHRDGQHEGPRPHGDPSSPHVRPDGPYGVPRSHDISISQYGP
HGGTQSRGAPNSSNMRSEDSHGGPKPPLNIPGRHDGPQGEPHGLSADSNARADHPHEGQR
PGRRGPNVRSEERHYGASRQNDSAPDGIKEEPRRDSTSGGSRPRDDSHDGSHEGQHETPH
GGSRSTDFPPGQHGPRDGPRGGPRPPLNIPPTNFSTSSQHGPRDGTRDGPRPRGLQNDSS
IRPDGPRGDPRPPLNIPLGPSSPRDSSNFGPRTVNNDTGRSFGPRGSRPPHFQKPRPGQP
KAELKSPEGDHRGASEARESFLRRSRDNSPRDSPPVKQERRTSDPDAPGILGDFQTHIQE
LQRGMLTLENITSSAVGRLFRPPQPDMAGPDRPPHGRSDMDRHHGPDSGRGIGRKGDRDR
SEADRRGDRPPYESRDRQDRSSRDRPGDSDRPPFDRSEMGLKEERSSHDRSDMSRPKDRP
SFEGFSGDRPSRSGGRNSFDRQDSGRQSDGSFSDEKDLPVNEKPGLLPIPDMFLARGPPS
HDGPPHDSGSSNHRPPDRRRDHGRFQDGRNDIRSDKQGFGRGPRDQPHTETIQGKSGGGR
NDGPQAAGETGIKPLMSLLDAPPVNLGSPPGHGNVENRGRKRSMEHEFDRPPKRMGTGDN
RERHR
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacgttgatccgacctcgcagtacaaattcgtcgcaaaaaccgcggcaaatctg
ccaggtcttgaagcgtcatcgacgattacaaatattgcaaacgatgctgcaacggtcccc
acaaccgagagcacttctccgactaccgttcaggcaccacctaatactgctacacacttt
caagcaccagagcatgcccaaaaacaggcagttctgctccaaaacgctggcgttgttggt
acagtacaatctggtcaaattcccccagcagcagcagcacaattggcacaaggtgtcgcc
gctgggatacctggacaaggtctaacctatgatgggaaaaggatgagaaaaactatgcaa
agaagaacggttgattataattcatcagtcatccgattcttagagagtagaaaatggttc
aagagctcacgaaatcagcatactttgcaacctcaagaaatatacaatgttgatattgta
ccaccctgtggttacatcaagaatccaatgaatgctgtcacaaccaagtttgtacggacc
tctacaaataaactacgttgccccatattttgcgttgtgtggaccccagaagggcgtcgc
ttagtcacaggcgcatctagtggagaattcacgttatggaatggactaacatttaacttt
gagacaattttacaggctcatgatcgagctgtacgctccatggtatggagtaataacgac
ctatggttattgactggtgaccatggtggttttgtgaaatattggcagtcaaatatgaac
aatgttaagatgtacgaagcacataaagaacctgttcgaggactaagtttttctccgtcc
gacaacaaatttgcgtcgtgttccgacgatggtctggtgaaagtctgggacttttacaga
tgtattgaagagcgagagttgaaaggtcatggcgcggatgtaaaatgtgttgattggcat
ccaacaaaaggtcttatcgtttctggtagtaaagacagtcaacaaccagttaaactctgg
gatcctaaaactggaaatagtataactacactgcattgtcataaaagtacagtgatgaca
gcaaaatggaacaaaaacggaaattggttggtaactggttcaagggaccatctgctgaag
ttattcgatatccgtatgatgaaagaactacagacattccgtggacataagaaagaagcg
acagtggttgcttggcatcctgttcatgaaacgctgtttgcgagtggagggtcagatggc
tcgctcatgttttggttgactggtgtcgatgagaaagcagggaccatggacaaagcccat
gaaggcattgtttggagtctctcgtggcatcctcttgggcacatactatgctcgggatct
aacgatcatacaagcaaattttgggcaagaaatcgtccgggtgacacgatgatcgataaa
tataacctggacattcaaggaagtcaggaggatggagattttacgagcgaggagggaaca
tctcacgcatctgtaccagcgcttgcggcgtatgatgcaagtcaagtcattccaggagtt
ggacttcctgtcacagctagcaatgttgttctccctgactccagagatgttgatgcacat
ttgtatggagaatccggtaaagataagatggcggttggtaaaccatcaacggcgacttca
tcagaactcccgtatccaccagctttctctcgttctaactttgaaaatcgttttggtatc
ccgggccttgatatgccaaacgcaaatatccaaattaaacaagaaaatgacgggtacaaa
atttcaaaccttcgggaaccacctaaacttcgtttgcccacgcgtcttccgattccgcca
aatcagagccactatccaccttcagggattcgcccacctcttacaaaccatccaggtaac
catccaccatttggacccagacatggatttgattttcgcggaccatccgggccgagaatt
ggagatccaaatgcaaattttggaccagcgggttcattcccgccaaaccaatatgcgcgt
ttccctggtccacgtggtggcatgcatgaagggccaagaggtggttttggagcccaaaga
gggccgcaccctgggccatggagtggaccgcatcatgcatcacgtggaggcccgtttgaa
ccttacggaccccaagggggaccgaacccccagaacaaaccccctaataactatgggcat
agagatggacaacatgaagggccacggccacatggagatccatccagtccccatgtacgt
ccagatggcccttatggtgtcccaaggtctcacgacatctctatcagtcagtatggacct
catggaggaacccaatcacggggagccccaaacagttctaacatgcgttcagaggactcc
catggaggaccaaagccgcccttgaatattcctggtcggcacgatggtccgcaaggagag
ccacatggactgtcagctgattccaatgcacgtgcagatcacccgcatgaaggccaaaga
ccagggcgacgtggtcccaacgtgcgttcagaggagcgtcattatggagcgtcaaggcaa
aacgattctgctccagacggcataaaagaagagccacgaagagatagcacatcagggggc
tcaagaccaagagacgattcacacgatggatcgcatgaaggacagcatgaaacaccacat
ggaggatcaagatcaaccgatttccccccaggacaacatggaccaagagacgggccacgt
ggaggcccgagaccccctctgaacatcccgcctacgaacttctctacgtcaagccaacat
ggaccaagagacggtacacgggatgggccacgaccacgaggactccagaacgattccagt
atacgtcccgatggcccccgtggagaccccaggccacccctaaatatacctcttggtcct
tcgagcccacgagatagctcgaactttggacctcgaacggtaaacaacgacacaggtcgt
tcgtttggaccgcgcggttctagacctccgcattttcaaaagccacgtccgggtcaaccg
aaagcggagctgaaatcaccagaaggtgatcatcgtggagcctcagaagcgagggaaagt
ttcttgagaagaagtcgtgacaattcaccacgagatagtcctccagtgaagcaagagcgc
cgcacctctgacccggacgcacctggaatcctaggtgattttcaaacacacatccaagaa
ttgcaacgcggtatgttaacgttggagaacattacaagctctgcagttgggcgtctcttt
cgacccccacagccggacatggctggtccggatcgaccacctcatggtagatccgatatg
gaccggcatcacggtcctgattcaggccgtggcattggaagaaaaggggatcgtgataga
tccgaagcggaccgacgtggagaccgaccgccgtatgagtcgcgtgatagacaagaccgt
tcgtcacgagatcgcccaggggacagtgaccgcccacccttcgacaggtcagaaatgggc
ctaaaagaagaacgttcttctcatgatagatcagacatgagccgccctaaagatcggcca
tcatttgagggtttttcaggggatcgtccttcgagaagtggtggtcgcaactcgttcgac
cgtcaggactctgggcgacaatcagatggttcgttttcagatgaaaaggatctgcccgtt
aatgaaaaacctggactattaccaatacctgacatgtttcttgcccgaggtccgccatct
catgacggtcccccacatgactctggatcgagcaatcaccgtccacctgatagaagacga
gatcatggtcgatttcaggacggccggaatgatatacgttccgataaacaaggatttggt
agaggaccccgagatcaaccccacaccgaaacgatacaaggaaaatccggaggaggtcgt
aatgatgggccacaggctgcaggggaaaccggaattaaacctcttatgagtctattggat
gctccccctgtaaatctcggtagccccccagggcacggtaatgttgaaaaccggggaagg
aagcggtcaatggaacatgaatttgaccgaccacctaaacggatgggaacaggtgacaac
cgagagagacatcggtag
DBGET
integrated database retrieval system
