Dendronephthya gigantea (soft corals): 114518839
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Entry
114518839 CDS
T06112
Name
(RefSeq) general transcription factor IIH subunit 4-like isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03022
Basal transcription factors
dgt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114518839
09124 Replication and repair
03420 Nucleotide excision repair
114518839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dgt03021
]
114518839
03400 DNA repair and recombination proteins [BR:
dgt03400
]
114518839
Transcription machinery [BR:
dgt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114518839
DNA repair and recombination proteins [BR:
dgt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114518839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
114518839
NCBI-ProteinID:
XP_028394647
LinkDB
All DBs
Position
Unknown
AA seq
469 aa
AA seq
DB search
MAAGGNQETTPFGRHLKCKNLHEYLQGLPVSVLDKLYGHSATCFAVFRELPELGKHFVMR
TLFAEQPLPETLVNAWVKKDQQNFCTGALNRLKQLRIWHVVTGWSQPRYELNPTFRRNLK
IALCGGGQSWCGGTDDLGPDKHSKDKDFLEKYALERWESVLHFMTASSPPDGIVGISADV
VQVLIVSGLMKSDKQEQTPMITPSGFQFLLMDVSSQIWYFMLKYLDMVEARGMDLIECLS
FLFQLTFSTFGKDYPTDNMTESQFNFLQHLREIGLVFQRKRKSRRYYPTKLVINLAVAGS
GNIATASEGVEGFIMVETNYRVYVYTDSPLQVALVGLFCEIICRFPKFCVAVLTRESVSQ
AFLSGITADQILHFLRTRAHAEMLRKNPVIPANIADQIRLWELEKCRMQLTEGVLYNQFL
SLSDFETLRKYAEDLGVLTWANSSKRVMIVSKSGHDDVKKFWKRQKPKE
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggcggcaaccaggaaactaccccgtttggccgtcatttgaagtgcaaaaac
ctccacgaatatttacaaggtttgcctgtgagtgtgcttgataaattatatggacactct
gcaacttgctttgctgtgtttagggagttaccagaattaggcaaacattttgtaatgcgt
acattgtttgctgaacaaccactacctgagacgcttgtaaatgcatgggtcaagaaagac
cagcaaaatttttgcacaggtgcactcaataggttgaaacaattgagaatatggcatgtg
gtgactggatggtcacagccaagatatgaattaaatccaacattcagaaggaatttgaaa
attgcactttgtggaggtgggcagtcttggtgtggtggaactgatgatctaggacctgac
aaacattccaaagacaaagatttcttagaaaaatatgctttagaacgatgggagtctgta
cttcatttcatgactgcatcatccccccctgatgggatagttggaataagtgctgatgtg
gtgcaagtccttattgtatctggtttaatgaaaagtgataaacaagaacaaactccaatg
attacaccttcaggatttcaatttctcttaatggacgtatcttctcaaatctggtacttc
atgctcaagtatttggatatggttgaggctcgtggcatggatcttattgagtgtctgtcc
tttcttttccaacttacgttttctacatttggaaaggactatcccacagataacatgaca
gaatcacaattcaatttcttgcaacatcttcgtgaaattggcttagtgttccagcgtaag
cgaaaatcgcgaagatattatccaactaagctagtcataaatttggctgtagctggctca
ggaaatatagcgacggcaagtgagggtgttgaaggttttatcatggttgaaacgaattac
agagtttatgtttatactgattctccccttcaagttgccttagttggattattttgtgaa
ataatatgcaggtttccaaagttttgtgttgctgtcttgactcgggaaagcgttagtcag
gctttcttgagcggtataacagcggatcagatccttcattttctcagaacaagagcccat
gctgagatgttaagaaagaaccctgtgattcctgcaaatattgctgatcaaattcgtctt
tgggaattggagaaatgccgaatgcagttgactgaaggggttttgtacaatcagtttctg
tctttatctgactttgaaaccctgcgaaagtatgcagaagatctgggagttctgacctgg
gcaaattcctcaaaacgtgttatgattgtgagcaagtcaggacatgatgatgtaaaaaag
ttttggaaacgacagaagccgaaggaatag
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