Dendronephthya gigantea (soft corals): 114518887
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Entry
114518887 CDS
T06112
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114518887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgt03019
]
114518887
03041 Spliceosome [BR:
dgt03041
]
114518887
Messenger RNA biogenesis [BR:
dgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114518887
Spliceosome [BR:
dgt03041
]
Complex B
Other components
Prp19-related factors
114518887
Complex C
114518887
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_12
TPR_8
TPR_2
ARM_TT21_C
ARM_TT21
DHR-2_Lobe_A
TPR_1
Motif
Other DBs
NCBI-GeneID:
114518887
NCBI-ProteinID:
XP_028394719
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MSISSKVTKNLIIEEDDLPFEEEILRNPYSVKCWSRYLEHKKSAPKSVKNLIFERSLKEL
PGSYKLWYIYLKECRRQVRGKPISDSSYEDVNNTFERALVFMHKMPRIWLDYCQFLMDQH
QITRIRRTFDRALRALPITQHYRIWPLYLKFVRSYPIPETAVRVYRRYLKLLSNNTEDYI
DYLKSVGRLDEAASKLADIVNQEKFVSKEGKSNHQLWHDLCQLISKNPDKVKSLKVADII
RGGLRRFTDSLGQLWCSLADYFIRSGHFEKARDVYEEAIQTVMTVRDFGQVFDAYAQFEE
SMINTKMEEAAEQVVDEDDETDLELRLARFENLMDRRPLLLSSVLLRQNPHNVHEWHKRV
KLFEGKPKDVINTYTEAVQTVDPKQATGKPHTLWVEFAKFYEKHKQIAEARVIFEKATKV
SYRRVDDLASVWCEFAEMEIRNENYKKALDVMKQGTAMPSTRTSFYDESETVQKRLHKSL
KVWSMYADLEESLGTFESTKAVYNRILDLKIANPQIIINFAVFLEEHRYFEESFKVFERG
VAMFKWPNVFDIWNTYLMKFIKRYGGTKLERIRDLFEQALEKCPAKFAKAFYLMYARLEE
DHGLARHAMAIYDRATKAVMPEEQFEIFNIYIKKAAEIFGVTHTREIYEKAIEVLGDDQS
RDMCVRFAELERKLGEIDRARALYMHASQIADPRATASFWETWHDFEVHHGNEDTFREML
RIKRSVQAKYNTQVNFMSAQMLAASQAMSDTSTGTSVDDMEKLEKQAQSLAEQAKKNQAN
PKGSLLFVRGEASEEQSLEEMARSANPEEISIDEDDEDEEEKVEEVQLEQQSIPSKVFGS
LAKDD
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatctcctccaaagtaaccaagaatctaatcatagaagaagatgatcttcctttt
gaagaggagatcttaagaaacccatactcagtaaagtgctggtcacgatatcttgaacac
aagaagtctgccccaaaatctgtgaaaaacttgatttttgaaaggtcattgaaggagttg
cctggaagctataaattatggtacatttatcttaaagaatgtaggagacaagttcgtggc
aaacctatctcggactcatcttatgaggatgtgaacaacacgtttgaacgcgctcttgtg
ttcatgcacaagatgcctcgtatttggcttgattattgccagtttttaatggatcagcat
caaattactcgaattcgacgaacatttgatcgagctctcagagctctacctataactcag
cattatagaatatggccgctgtacttgaagtttgtacgctcgtatccaattccagagaca
gcagtaagggtttaccgacggtacctcaagttgttatccaacaacactgaagactatatc
gattatctgaaatcagtaggaagattagacgaagctgcgagcaaattggcggatattgtg
aatcaggagaagtttgtctcaaaagaagggaaatctaatcaccagttatggcatgacctc
tgtcagttgatttctaaaaacccagataaggttaagagccttaaagtagcagatattatc
cgcggtggtttacggagatttaccgacagtttgggccagctgtggtgctctttggccgac
tatttcattcgcagtggacactttgagaaagcgcgggatgtttacgaggaagccattcaa
actgtgatgactgtcagagactttggtcaggtattcgatgcttacgctcaattcgaggag
agtatgatcaacactaagatggaagaggctgccgaacaagtcgttgacgaggatgatgag
accgatcttgagttgcgtttggcgagatttgagaacctgatggatcgaagaccgcttctg
ttgagcagcgtgctgcttcgtcagaatcctcacaacgttcacgaatggcacaaacgagtt
aaactttttgaaggcaaaccaaaagacgtgatcaacacctacacagaggccgttcaaact
gtcgatccgaaacaagctacaggaaaacctcacacactttgggtcgagttcgctaaattt
tatgagaaacacaaacaaatagctgaggccagggtgattttcgagaaagccaccaaagtt
tcgtatcgccgagttgatgatctggcgagtgtgtggtgtgaattcgctgagatggaaata
cgaaacgaaaactacaagaaagctttggatgtcatgaagcaagggacagccatgccttcc
accaggaccagtttttatgatgagtcagaaacagttcagaagcgacttcacaagtcactg
aaagtttggtctatgtacgctgatttggaagaaagcctaggtacatttgagtctacgaag
gcagtttacaacagaattctggacttgaagatcgccaaccctcagataatcatcaacttt
gctgtttttctcgaagagcatcgttattttgaagaatctttcaaggtctttgaacgaggt
gttgcgatgtttaaatggccgaacgttttcgatatttggaacacatatctcatgaaattt
attaaacgttatggtggaacaaagctggaacgtattcgtgatctgtttgaacaggctctg
gagaaatgcccagcaaaatttgcaaaagctttctatttaatgtatgcacgcctcgaagag
gatcatggtcttgcccgtcatgcaatggctatttatgatcgagcaacaaaagctgtgatg
ccggaagaacaatttgagatttttaatatttacatcaagaaagcggctgaaatatttggc
gtcactcatacaagagaaatttacgagaaggcgattgaagttctcggcgacgatcaatca
cgtgacatgtgtgttcgttttgctgaacttgaacgtaaactgggagaaattgatcgagca
cgtgctctttacatgcatgcttcacaaatagctgatccaagggcaaccgcgtcattctgg
gaaacgtggcatgattttgaagtacatcatggaaatgaagacacattccgtgaaatgtta
agaatcaaacgaagtgttcaggcgaaatacaacacacaggtcaattttatgtctgctcaa
atgcttgcggcttctcaagcaatgtcggatactagtacaggaacctcggtcgatgacatg
gaaaaattagaaaaacaggctcaaagtttggcagaacaagcaaagaagaatcaagcgaat
cccaaaggaagtttgctcttcgtcagaggtgaagcgagtgaagaacaaagtttagaagag
atggctagatcagccaaccctgaagaaatatcaattgatgaagatgacgaagatgaggag
gagaaagtcgaggaagttcaactcgagcagcaaagtattccgtccaaggtatttggcagt
cttgcaaaggatgattag
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