Dendronephthya gigantea (soft corals): 114520450
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Entry
114520450 CDS
T06112
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt04512
ECM-receptor interaction
dgt04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114520450
04518 Integrin signaling
114520450
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dgt00536
]
114520450
Glycosaminoglycan binding proteins [BR:
dgt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114520450
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
114520450
NCBI-ProteinID:
XP_028396897
LinkDB
All DBs
Position
Unknown
AA seq
1398 aa
AA seq
DB search
MNVEGHMRLKMSAAVLCLYLLISIISLREVSGQEDTRVIKGPRGENGEPGLKGVSGEDGR
PGGRGSRGGQGESGLSGKNGKAGFSGLQGGQGWPGKIILRFSNIASKGPRTGTPSVVIGG
NYFAPRGPRGATGVRGKHGLVGEPGPIGSPAPMGPPGPSGRVGSRGYGGLKGKLGNRGHR
GRPGRYGKAGRDGDQGSQGAPGTLGRTGYDGEIGRDGLKGTRGEQGTKGRSGGPGPKGRP
GKNGETGQPGGLGTKGDKGLKGRRGFPGRSGQEGHQGDPGMPGDIGSPGLAGFTGWWGKK
GENGSGGKKGDMGPRGRDGDGGVNGRQGEPGMMGPKGEQGDSGASGLGAPSSAPVGEPGT
TGAPGISGASGEKGEQGAPGPPGKKGEKGPMGDAGSQGENGQAGSDGKTGTDGDLGIAGN
VGVLGTKGFKGDAGFQGRAGEAGSQGGDGDEGLPGDDGEEGDEGDEGPSGLPGANGLDGD
IGEPGEVGDRGLRGANGGVGDRGDRGVTGLEGALGQPGPGGISGEKGKQGGNGEQGQQGS
PGDQGDKGNNGPDGDDGTAGRNGIKGDSGERGEKGDMGESGLPGENGQIGDPGVTGNDGE
KGGNGDPGQLGAGGEKGQKGDAGTAGLSGDEGEHGYKGRQGVEGMPGVRGLPGQEGSPGS
NGENGLQGSDGLEGLRGRPGEKGEKGDPGKTGESGKNGNPGSAGFRGTEGSMGDMGFSGI
KGPMGERGSSGRAGVDGSKGAQGARGSEGTIGKRGLMGLQGDTGAVGTAGLKGPSGQRGD
DGNLGSQGKRGKKGERGKTGEKGSRGDTGEEGIQGEQGANGFQGPSGTQGETGSSGKLGD
AGASGQKGDKGEVGYSGDVGQKGLQGKTGKTGKKGSFGDVGYAGPPGQFGETGETGVVGD
KGVPGLRGVVGSSGPPGEKGKKGDDGDDGKKGVSGEKGVRGPSGASGDKGQQGSEGRRGS
KGTKGRNGAPGERGMQGDVGSVGKIGSTGLAGRPGGLGIKGLRGESGEKGPDGREGPEGP
QGSKGIKGKSGLIGERGIQGVPGQKGIKGERGGQGHSGQPGEYGYTGSKGKPGLPGIQGP
SGDTGDLGRPGPPGLAGGKGEIGSSGYVGITGSTGPKGPRGLQGPPGRPGLPGPPGRGRA
RETRSPEYYQSKVLSMIDEINTNSLSYNTDERNMVKVLRGISNVIDDFQLLAHVNGSKQF
PSRTCKDLKNSLPSLKSGKYWIDPNGGVPNDAVLVFCDFENLSTCISPKISEVEKKKWYT
GNDRYIWVGEELGNFKKIVYELDGNQMKFLQILSTKASQSITYHCRNSFAWRNNENIERD
YVKMLGDNGLEYHALRARKFRPVAFQDDCKVKDGNWHKTTIDVNTVNTVRLPLRDIAVYD
VGDENEEFGIDIGAVCFS
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttgaaggccatatgagactaaagatgtctgcagcggtgttatgtttgtattta
ctcatctcaattatctctctccgagaagtaagtggacaagaggacacacgagtgatcaaa
ggtcctagaggagaaaatggagaacctggactcaagggagtcagcggagaggatggaaga
cctggcggacgaggaagtcgtggaggacagggagaatcaggtttatcaggcaaaaatggg
aaagctggattctcaggtttacagggtggtcaggggtggcctggaaaaataattttacgg
tttagcaatattgcttccaaaggccccaggactggaacaccgtccgttgtgattgggggt
aactactttgccccgcgtggaccaaggggagcgactggtgtgaggggtaagcatggattg
gtgggagaaccaggtccaatcggtagcccggcaccgatgggaccacctggtccgtcaggc
agagttggatcacgggggtatggtggtcttaagggaaaactaggaaatcgaggacacaga
ggtcgcccaggaagatatggaaaagcgggacgtgatggagaccaaggatcacaaggcgca
cctggtacactcggaagaacaggatatgatggtgaaattggtagggatggtttgaaagga
acccggggggaacagggtactaaaggccgcagcggaggaccgggacccaaaggaagaccg
ggtaagaatggtgaaacaggacaacccggaggattaggaaccaaaggtgataagggtttg
aagggacgtcgaggatttccaggaaggtctggacaggagggacatcaaggtgatccaggg
atgccaggagatattggctcaccagggcttgccggatttacaggatggtggggaaaaaag
ggtgaaaatggtagtggagggaaaaaaggagatatgggacctcggggtagagatggagac
ggaggggtaaatggtagacaaggggaacctggaatgatgggacctaaaggagaacagggt
gattcgggtgcttcaggtttgggtgcaccgtcttctgcgccagttggagaaccgggaacc
actggagctcctggtatttctggagcgtctggagagaagggagaacaaggtgccccagga
cctcctggaaaaaaaggcgaaaaaggaccaatgggagatgctggatctcaaggagaaaat
ggacaagcaggctcagatggaaaaactggcactgacggtgatctaggaattgcaggaaat
gttggcgttttaggaacgaagggtttcaaaggtgatgcgggttttcaaggaagagcagga
gaagctggttctcagggcggtgatggtgatgaaggtctgcccggtgatgacggggaagaa
ggtgatgagggtgatgaaggacctagcggattacctggggcgaatggattagacggtgac
attggtgaacccggtgaagtaggtgataggggtttgcgaggggcaaacggaggtgttggt
gatagaggagacaggggagtgactggtttggagggtgcccttggacagcctggacctggt
ggcatctctggtgaaaaaggtaaacagggtggaaatggtgaacaaggacaacaaggttca
cctggagatcaaggagataagggaaataatggtccggatggtgatgatggtacagctgga
agaaatggaatcaaaggtgattctggtgagagaggagaaaaaggcgacatgggagaatca
ggattaccgggtgaaaatggtcaaattggtgatccaggggtgacagggaatgatggagaa
aagggtggaaatggggatccaggccaattaggggcaggaggagagaaaggtcaaaaggga
gatgccggaacagctggactttcaggtgatgagggtgagcatggatacaagggaaggcaa
ggagttgaagggatgcctggtgtgaggggtcttcctggccaggagggctcacctggcagt
aatggagaaaatggtcttcagggttcagatggattagaaggcttgcgaggtcgcccagga
gaaaaaggtgaaaagggtgatcctggtaaaacaggagaatctggtaaaaacggaaatcct
ggatcagcaggctttcgtggaactgaaggcagcatgggagatatgggcttcagtggtatc
aagggacccatgggcgagcgaggctcttcggggagagctggcgttgatggatcaaagggc
gctcaaggtgcaagaggaagcgaaggtactattgggaaaagaggtttaatgggtttacaa
ggtgatactggggccgttggtacggctggtttgaaaggcccatcgggacaacgtggtgat
gatggtaatcttggaagccaaggaaagcgtggtaaaaagggtgagcgaggaaagacaggt
gaaaaaggttcacgcggtgatacaggggaagagggtattcaaggcgaacaaggagctaac
ggttttcaaggaccatctggtacgcagggcgagacaggctcttcagggaagctaggagac
gctggtgccagtggtcagaagggtgataagggtgaagtgggatattctggggatgtcggt
caaaaaggacttcagggtaaaactggtaaaactgggaaaaaagggagttttggtgatgtc
ggttatgcgggtcccccaggtcaatttggtgaaaccggagaaactggcgtcgttggtgat
aagggtgttccagggttacggggggttgttggttcatctggacccccaggtgagaagggt
aaaaaaggcgatgatggagacgatggcaaaaagggcgtctctggagagaagggagtgaga
ggcccgtctggtgcgagtggagataaaggacagcagggctcagagggtaggaggggatca
aagggaactaaaggtcgaaatggggcacctggagaacggggaatgcaaggcgatgtcggg
tcagttggtaaaatcggttcaacaggtttagcaggacgacctggaggacttggaattaaa
ggattacgcggagaatctggtgaaaaaggacctgatggacgggaaggacctgagggacct
caaggaagtaaggggattaagggaaaaagcgggttgattggtgagcgtggaatacaaggt
gttcccggtcaaaagggaattaaaggtgaaagagggggacaggggcattctgggcaacct
ggggaatacggatataccggttccaaaggtaaaccagggctgcccgggattcaaggacct
tcgggtgacacaggggaccttggaagacctggccctccagggttggcaggaggaaagggc
gaaattggttctagtggatacgtcggtataactggaagcacgggacctaagggtccacgt
gggttacagggtccacctggccgtccaggtctaccaggacctccagggagagggcgagct
cgtgaaacccgatcacctgaatactaccaaagcaaagtgttaagcatgattgatgaaata
aataccaacagtctttcttacaatacagacgaaaggaatatggtaaaggtactacgtggt
ataagcaatgttatagatgattttcagttgttggcacatgtcaatggaagcaaacagttt
ccctcaagaacttgcaaggatttaaaaaattcgctgccttcgttaaaatcagggaaatat
tggattgatccaaatggtggagtaccaaatgatgctgttttagtcttttgtgattttgaa
aacctgtctacatgtatttcaccaaaaatatccgaggtagaaaagaaaaagtggtacaca
ggtaatgatcgttacatttgggttggagaggaactcggaaactttaaaaagattgtttat
gaacttgatggcaatcaaatgaaatttttgcaaatcttatcaactaaagcatcgcagagt
attacttatcattgtcgcaactcgtttgcctggcgaaataatgaaaatattgaaagagat
tatgttaagatgcttggagataatggtcttgaatatcatgcgctacgtgcccgaaaattt
cgacctgtagccttccaagatgattgtaaggtgaaagatggcaactggcataaaaccaca
atcgacgttaatacagtcaatactgttcgactccctctgcgtgatattgctgtttatgac
gttggggatgaaaatgaagaatttggaattgatattggagcagtttgcttttcataa
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integrated database retrieval system
