Dendronephthya gigantea (soft corals): 114520561
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Entry
114520561 CDS
T06112
Name
(RefSeq) collagen alpha-2(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114520561
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dgt00536
]
114520561
Glycosaminoglycan binding proteins [BR:
dgt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114520561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWA
EGF_3
cEGF
VWA_2
Plasmod_Pvs28
FXa_inhibition
EGF_MSP1_1
EGF_CA
EGF
Motif
Other DBs
NCBI-GeneID:
114520561
NCBI-ProteinID:
XP_028396663
LinkDB
All DBs
Position
Unknown
AA seq
1742 aa
AA seq
DB search
MKLELLLLLVSFSFINAQEDTWKCEEKSDITFVLDRSGSINPGDYLQMQKFLKVVSNKLQ
IGVRNDAGQVIGQGGMVTFSETAEVEILLSSSAARGAFDRAVDALEGPLPGGRTNTHLGL
DLADKTVVQQSNGYRGDDDEVNHILMVITDGEQTKGRGYVAVKEAIKPFFDRNMEVFAVG
VGLDKDEAKQEIYDMVRPEKRSTNAIFPTSYTDLINQVNDIVRRFCPVPPICGTDKDDCH
PTLATCTDTDPGVYECNCIDGYVGDGKTCAFPPICGTDKDDCHPTLATCTDTDPGVYECN
CIDGYVGDGKTCALERICGTELDDCDPDATCRDTAPGKYTCTCNEGFTGDGKSCDAIINI
LKGPKGNRGERGETGEPGADGRDGAGGSGGPTGRRGRKGMDGREGNPGPYGESGPAGQPG
GLVLSFAAGYLDRGRSPDEAPKGPVERVVINLGDRQVGPRGPRGRTGPQGAIGSPGSQGS
QGARAARGPHGPMGKPGAPGPDGKEGNSGSNGHRGRPGARGDAGERGERGETGKRGFFGR
TGYSGDVGRMGVSGLTGEKGATGSVGKRGLSGRKGSIGRQGTSGLSGERGRIGLTGGRGD
QGSTGSKGLIGSPGKDGHPGFIGPKGYVGARGSIGDTGLTGETGDQGEQGPQGESGQNGR
DGEAGSPGKKGELGDPGSFGTIGGVATQGEDGSPGIPGIPGAPGPKGEPGEPGDKGEVGD
QGPVGDPGVNGLPGEEGNEGSRGKQGAPGVQGSVGRNGVKGPAGERGSSGPDGDSGNEGE
EGSRGAPGQDGEPGRVGEDGYRGESGKRGEPGAAGRQGATGPDGVPGQTGETGDEGFQGV
RGDMGEQGLSGVQGQYGARGKDGEDGAEGEAGEQGEQGAAGGPGRDGEDGNEGNTGVEGE
QGERGVQGDDGVSGQDGEDGARGDPGRDGGDGDKGMVGDVGAEGSVGETGPKGEVGSPGP
DGEKGQKGMKGSAGDSGADGAPGMAGPAGADGDSGDAGSQGSQGDQGRPGQPGANGKTGN
RGAKGENGRSGKNGRNGQQGAAGDPGAAGPNGKRGAQGDQGPVGARGKTGAAGPDGQAGP
AGQAGAVGRRGMQGNAGDVGEPGEQGPSGAVGSSGAVGAAGERGKKGQAGSAGEKGARGD
VGNMGDVGPQGDVGPVGADGAKGGQGKTGDTGAAGADGDKGMKGDKGFDGDIGEKGPQGL
PGLPGVGGPGGDLGAAGPPGFAGETGADGGRGEPGDAGEVGAQGPPGPPGEQGAKGEDGS
DGKDGASGEQGPAGGKGYAGSPGGYGKRGVTGVTGRKGDLGAAGERGLTGDVGVQGVTGN
PGVAGPRGAKGLEGAKGELGIEGAVGSVGEAGVDGATGLKGMKGVQGERGARGTSGEKGS
KGEMGGIGAGGGSGSLGAKGEPGGAGLPGLKGPQGDPGKLGDSGGIGGIGKQGSDGNRGA
GGPIGDRGPKGPSGGAGPPGPPGPPGTSAQSGVAGAGQFAETFASKGPERQPDYYRTRME
ELLHQVEENTISVDNSLKVEPLRSITSALRDIDLLKHPDGSKKHPASTCRDLHMSHPTLE
NGNYWIDPNGGVPNDAVLAHCQFESLSTCVLPNNLEVEKKSWYFGKDRYLWFSEELKKTK
KIQYIADGNQIRFLQMFSAKGWQNITYHCRDSAAWSDENNSKTKSIKLRGDNGMEYHALS
AKKFRPVVVKDECNKKDGQWHETTIQVYTTNTARLPIRDVAVFDVGGKNEEFGIEFSAVC
FS
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atgaagttggaacttcttctattgctggtttcgtttagttttatcaatgcccaagaagat
acatggaaatgtgaagagaaaagtgatataacttttgtattggacagatcagggagcatt
aatcctggtgattatctacaaatgcaaaaatttttgaaagttgtttctaacaaactacaa
atcggtgtaaggaatgacgcgggtcaggtaataggtcaaggaggtatggttaccttcagt
gaaacggctgaagttgagattcttttaagttccagcgcagcacgtggagcatttgataga
gcggttgacgcactggaaggtcctttaccaggaggtcgtacaaacacacatttaggccta
gatttagcggacaaaactgtggttcaacaatcgaacggatatcgaggagatgacgatgaa
gtaaatcatatactaatggtgataacagacggagaacaaacaaaaggaaggggttacgtt
gccgttaaagaggctattaaacctttctttgacaggaatatggaagtatttgcggtcggt
gtaggattggataaagatgaggctaaacaggaaatctatgatatggttaggccggaaaag
cgaagtacaaatgcaatcttccccaccagttatactgacttaataaatcaagtgaatgat
atcgtccggagattttgcccagtccctccaatctgtggcactgataaagatgactgtcat
ccaacactagcaacttgcactgacactgatcccggagtatatgagtgtaactgcatcgac
ggatatgttggagatggaaagacttgtgctttccctccaatctgtggcactgataaagat
gactgtcatccgacactagcaacttgcactgacactgatcccggagtatatgagtgtaac
tgcatcgacggatatgttggagatggaaagacttgtgctttggaacgcatatgtggtacg
gaactcgatgactgtgaccctgacgccacgtgcagagacacagcaccaggaaaatatact
tgtacatgtaacgaggggtttactggtgacggaaaatcctgtgatgcaattataaacatt
cttaaaggcccgaaaggtaaccggggtgagagaggagaaacgggtgaacctggggcagat
ggacgtgatggtgctggcggaagcggtggaccaacgggtcgtcgtggtcgaaaaggtatg
gacggaagagaaggtaacccaggaccttatggtgaaagtggtcccgcaggacaacctgga
ggcttggtactttcatttgcagctggttatcttgatcgagggcgaagcccagatgaggca
ccgaaaggaccagtagaacgagttgtaattaacctgggtgataggcaagttggtcctcgt
gggccaagaggaagaacaggcccccagggggcgattggttcacctggttcccaaggatct
caaggagctcgagctgcaaggggtcctcatggtccaatggggaaacctggagctcctggt
cctgatggaaaagagggcaattctggttcaaatggtcatcgtggacgtccaggtgcccgt
ggagatgcgggcgaacgtggtgaacgaggtgagacggggaaacgtggtttcttcggacgc
acgggatactccggtgacgttggaagaatgggtgtatctgggctcacaggtgaaaagggt
gcaactggatccgttggaaaacgtggtttaagcggaagaaagggtagtattggtagacaa
ggaacgtcaggtttatcaggagaaagaggtagaattggattaacgggcggacgaggagat
caaggatcaactggatctaagggtttaattggctcacctggaaaggatggtcatccagga
tttattggaccaaagggctatgttggtgctcgaggtagtattggagacacaggattaacc
ggagaaactggtgaccagggtgaacaaggaccacagggagaatctgggcagaatggtcgt
gatggagaagcgggttctcccggaaagaaaggagagctgggtgatcctggaagttttggt
actattggaggagttgcaacacaaggtgaagatggatcacctggtatacctggtattcct
ggagctcctgggcctaagggagaacctggtgaacctggtgataaaggagaggttggcgat
caagggcctgtcggcgatcctggtgtaaatggacttccaggtgaagagggaaatgaaggt
tcacgaggcaagcaaggcgctcccggggtccaaggttcagttggaagaaatggtgtgaag
ggtcctgctggtgagcgaggaagttctgggccggacggagattctggtaatgagggtgaa
gaaggaagcagaggagctcctggacaggacggggaacctggaagagttggagaggatggc
tatcgtggagaaagcggaaaacgaggagagccaggtgccgctggccgtcaaggagcaaca
ggtcctgatggggttccaggccaaactggtgaaactggcgatgaaggattccaaggcgtt
cgcggtgatatgggtgaacaaggtctttctggggttcaaggacaatacggcgccagagga
aaagacggtgaagatggagcggaaggtgaagctggggagcaaggagaacaaggagccgct
ggaggtcctggacgtgatggcgaggatggcaatgaaggaaacactggagtagagggtgaa
caaggtgaacgaggagtacaaggtgatgatggagtttctggtcaagacggtgaagatggt
gctcggggagatccaggaagagatggtggagatggagataagggaatggttggtgatgtt
ggtgcggaagggagtgttggtgaaacgggacccaaaggagaagttggttctcccggacct
gatggagagaagggacaaaaaggaatgaagggaagtgctggtgattcaggagctgatgga
gcaccgggaatggctggtcctgcgggtgcagatggggattccggggatgctggatcgcaa
ggaagtcagggtgatcagggaagacctggccagcctggagcaaatggaaaaacgggaaac
cgtggtgccaagggtgaaaatggaaggtctggcaaaaatggaagaaatggacagcaaggg
gcagctggggatcctggggcagctggaccaaacggaaaacgtggtgctcaaggtgatcaa
gggcctgttggagcacgtggaaaaactggagcggccggcccagatgggcaagctggacca
gctggtcaagccggagctgtgggtagacgcggtatgcaaggtaatgctggtgatgttgga
gaacctggagaacaaggaccttcgggtgcagttggatcctctggagctgtaggagcagct
ggtgaaagaggaaaaaagggtcaagcaggatccgctggagaaaagggtgcccgaggagat
gtcggaaacatgggagatgttggtccgcaaggcgacgtaggaccagtcggtgcggatggc
gcaaaggggggtcagggtaaaactggagatactggagcagcaggagctgatggtgataag
ggaatgaaaggagataaaggtttcgacggtgatattggcgagaaaggccctcaaggtcta
cctggattacctggcgtaggaggtccgggaggtgatttgggagctgctggtccgcctggt
tttgccggtgaaacaggggcagacggaggaagaggcgaaccgggagatgcaggtgaggtt
ggagctcaaggtccccctggacccccaggagaacagggtgcgaaaggcgaagacggttcg
gatggtaaagatggtgcaagtggcgaacagggtcctgctggtggcaaaggatacgctgga
tcaccgggtggttacggaaaaaggggtgtaactggagttacaggcaggaaaggtgacctt
ggtgctgcaggagagaggggtttaacgggcgacgttggagtacaaggagtgaccggaaac
cctggtgttgctggaccacgtggagcaaaaggtctcgaaggagcgaaaggagaactagga
attgagggtgcagttggttctgtcggtgaagcaggtgtagatggagcgacaggactcaaa
ggaatgaaaggagtacagggagaaagaggtgcccgaggaacatctggtgaaaagggaagc
aaaggagaaatgggtggcattggggcaggtggtggttccggttcactgggagcaaaaggt
gaacctggtggagccggattacctggcttgaaaggacctcaaggtgatcctggtaaactt
ggtgattctggaggtataggaggaataggaaaacagggaagtgatggcaatcgaggagcg
ggcggtccaataggtgatcgtggtccaaagggaccaagtggaggtgctggaccacctggt
ccacctggaccaccaggaacatctgctcaatctggtgtagcaggggctggtcaattcgcg
gagacgtttgcttctaaaggacctgaacgccaacctgactattaccgcacccgaatggag
gaattacttcatcaagttgaagaaaatacaatttctgttgacaatagtttaaaggtggaa
cctcttcgttctataacatcggcactaagagatattgatcttctgaaacatcctgatgga
agcaaaaaacatcctgcgtcgacgtgccgagatctccacatgtctcacccaacattagaa
aatggcaattattggattgatccaaatggcggagttcccaacgatgccgtattagcgcat
tgtcaattcgagagcctatcaacttgtgtattacccaacaatctcgaggttgagaagaag
agctggtacttcggcaaagatcgttatctctggttctcagaagaactaaaaaaaacgaaa
aagatacaatacattgcggatggaaatcaaattcgtttcctgcaaatgttctcagccaaa
ggatggcagaacattacttaccattgtcgtgactcagccgcctggagtgatgaaaataat
agcaaaaccaaatcaatcaaattacgtggagataacggaatggaatatcatgccttaagt
gccaagaaattcagaccagttgttgtcaaagatgaatgtaataaaaaagacggtcaatgg
cacgaaacaacaattcaagtatacacaactaatacagcacgattacctattcgcgacgtt
gctgtttttgatgttggcggtaaaaacgaagaatttggaattgaatttagcgcagtttgc
ttctcttga
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integrated database retrieval system
