Dendronephthya gigantea (soft corals): 114520597
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Entry
114520597 CDS
T06112
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114520597
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dgt00536
]
114520597
Glycosaminoglycan binding proteins [BR:
dgt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114520597
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
114520597
NCBI-ProteinID:
XP_028396706
LinkDB
All DBs
Position
Unknown
AA seq
1409 aa
AA seq
DB search
MRRKALLFSLLLALSLFSISYSQDETSEESDVELKVLQGPKGDKGEPGEKGELGIDGRPG
QNGRKGREGRNGAYGKDGNAGRKGSRGPRGHPGYIGSIVISTMNSDSKGPGPNGGDNRII
IPPPRPGPPGPEGKTGKRGVEGDYGPMGPEGEAGGKGGPGAPGKIGPRGNDGLIGNPGDH
ANPGSPGRMGAKGLIGENGKPGARGRKGHAGWKGDVGPVGDSGLQGDQGAAGIDGGQGEK
GTKGRGGVAGSTGPRGQFGSAGKKGRPGKIGSDGSKGRAGHPGSRGKRGRPGLKGPQGSA
GLRGDTGITGENGNRGDMGTNGLPGATGHKGPTGKHGYKGSMGDPGPIGVQGKIGPVGVS
GDVGSEGSRGGRGDKGEVGPQGDQGPRGDKGPLGDTGIRGYRGNRGEEGRQGAIGSMGPE
GPAGQPGLTGQYGETGIDGPDGAAGIKGGDGGNGLRGRHGSKGFKGNDGSIGVHGKRGKK
GKKGRTGHRGRSGPNGDDGEDGDDGHAGSAGREGLQGLQGISGVVGPKGETGKEGLPGEK
GGLGPVGPSGSDGNDGGPGVTGLQGLMGPPGGRGERGIRGIAGDMGDDGDVGVPGKDGAD
GEPGASGDEGSRGVAGEKGERGPAGSYGPEGDSGSSGFKGAGGGRGNVGLKGPAGPDGSA
GMAGSSGSLGLKGPTGVIGMRGSKGKMGDNGKKGGRGTAGNAGGKGQVGADGAVGDAGSS
GEKGPSGDRGKSGGPGRRGKQGDRGDPGMQGLAGEPGKPGSIGKRGESGEQGKAGATGEN
GEQGLPGVAGMRGADGFPGRRGEAGKIGGEGVAGGSGPLGDKGATGIPGKQGDQGAVGNL
GGRGGNGRKGYPGPLGYTGDRGLAGPSGDQGPPGKPGEVGAQAGPGTPGPVGEPGPRGKP
GLRGNFGLTGRTGPIGPSGAAGDDGKSGRNGKDGKVGDQGKDGPKGIRGGPGRTGKPGKS
GLPGNSGDSGKSGTRGEPGDLGLPGESGGNGGGGKPGPKGSQGRPGEYGPQGNSGGKGFK
GDRGVDGPKGIQGSQGRAGLLGADGQKGMKGDPGKQGLPGLAGKPGGRGKNGEVGVTGLK
GPTGDAGTLGSHGSQGLIGQKGNIGYAGSRGSTGNPGPKGLRGARGRPGPPGPPGTAGYL
TSSRYQQVPRTSGEKGPFRYYQGRTKDTNEIELSESHNANIDFKDQHSVEVVSELIHITK
SYKNPDGSKKYPALTCQDLRMFHPNLENGQYWVDPNGGAVEDAVLVQCDFETNATCFAAK
AQNVPKQKWLIQPGQHVWFRKDLEKTSDFYYVVDGSQLRFLKMLSVSGWQSVTYHCRNSL
AWEDDNGDRKYSIKLKGDNEVEYHALSPRKLRPNVLIDDCKNNDDNWRQTIVEIRTGNPS
RLPIRDVATYAFDANHQEFGIDLGLVCFV
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgagaagaaaggctttgttgttctcgctattgcttgctttgtcattattctcgatatcg
tacagccaggacgaaaccagcgaagaaagtgatgtcgaactaaaagtcctccaaggacca
aagggagataaaggggaacctggagaaaaaggtgaactaggaatagatggcagacctggc
caaaacggaagaaaaggtcgtgagggtcgtaatggtgcctatggaaaggatggaaatgca
ggaagaaagggctctcgtggaccacgaggacatcctggatacataggatcaattgttatt
tctacaatgaattcagatagtaaaggacctggtccaaatggaggcgataatcgaattatt
ataccgcctcctcgtcctggtccacctggtcctgaaggcaaaactgggaagcgcggtgtc
gaaggagattatggaccaatgggaccagaaggagaagctgggggaaagggtggaccggga
gctcctggtaaaattggtcctagaggaaatgatggtttaatcggcaaccctggtgatcat
gctaatcctggatctccgggtcgaatgggagcaaagggacttattggagagaatggaaaa
cctggtgctcgtggaagaaaagggcatgctggatggaagggagatgtaggtccagttgga
gattcgggattacaaggagatcagggcgctgctggtattgatggaggacaaggtgaaaaa
ggaaccaagggtcgtggcggggttgcaggtagtacgggacctcgaggacagtttggttct
gctggaaagaaaggacgtcctggaaaaatcggaagtgatggttcgaagggtcgtgcaggt
catcctggtagtcgtggtaagcgtggtcgtcctggtttaaaaggaccgcaaggaagtgca
ggtttacgaggagataccgggatcacaggagagaatggtaaccgaggcgacatggggact
aatggtctccctggggcaactggtcacaaaggacctacgggaaagcatggatataaaggt
tccatgggagacccaggtccaattggtgttcaaggaaaaatcgggcctgttggtgtttca
ggagacgtaggatccgagggatcacgaggaggtagaggggataaaggtgaagttggtccg
caaggtgatcaaggacctcgtggtgataaaggcccactgggagatactggaattcgagga
tatcgaggcaaccgtggagaggagggaagacaaggagcaattggttctatgggtcccgaa
ggcccagcgggtcagccaggattgacgggtcaatatggcgagactggtattgatggtcca
gatggtgccgctggtataaaggggggtgacggtggtaatggccttcgtggtcgtcatggg
tccaaaggtttcaagggaaacgatggttctattggtgttcacggaaagagagggaaaaaa
ggcaaaaaaggtcgaacaggacatcgtgggagaagtggtcccaatggagatgatggagaa
gatggagacgacggtcacgcgggttcagcaggtcgtgaggggcttcaaggtctgcaaggg
atttccggcgttgttggacctaaaggtgaaacgggaaaagaaggtttaccaggagagaaa
ggaggactcggtccagttggaccttcgggttcagatggaaacgatggtggtccaggtgtt
acaggtttacaagggttgatggggccacctggaggacgaggtgaacgaggcattcggggc
atcgcaggagatatgggtgatgatggcgatgtgggggtgcctggaaaagacggtgcggat
ggagaaccgggtgcgtcaggtgatgaaggttctaggggcgtggccggtgaaaagggtgaa
agaggtccagctggtagttacggaccagagggtgattctggttcttctggtttcaaaggt
gctgggggtggacgaggcaatgttggtttaaagggtcctgctggaccagatggaagcgcg
ggaatggccggaagctctggaagtctgggcttgaaaggtcccactggggttatcgggatg
cgcggtagcaaaggaaaaatgggtgataatggtaaaaaaggtggccgaggaaccgctggt
aatgccggggggaagggacaagttggtgcagatggggctgttggagatgccggatcaagt
ggtgaaaagggaccctctggagatcgtggaaaatctggcggtccaggccggcgtggaaag
cagggcgatcgtggagaccctgggatgcaaggtctggctggggagcctggcaaaccgggt
agtattggcaaacgtggagagtcaggagaacaaggaaaggctggagcgacgggcgaaaat
ggtgaacaaggtttacctggtgtagctggaatgaggggtgcggatggctttcctggacgc
cgcggcgaagctgggaaaattggaggagaaggcgttgctggtggttctggaccacttggt
gataaaggagcaactgggatacctggtaaacaaggtgatcagggggcagttgggaatcta
ggtggtcgtggtggaaatggtcgcaagggataccctggtcctttaggatacactggagat
cgtggattggctggaccgtcgggtgatcagggaccacctggtaaaccgggagaagttggc
gctcaagcaggacctggtactccgggacctgttggtgaaccaggacctcgagggaaacct
ggactcaggggcaattttggattaactggaaggactggacctattggtccatctggtgct
gcgggagatgatggaaaatcaggaaggaatggaaaagatggaaaagtgggagatcagggt
aaagatgggccgaaaggaattcgcggaggacctgggcgtactggaaaacccggaaaatct
gggcttcctggaaattctggggattctggaaaatctggaactcggggagaacctggggat
cttggtttgcctggagaatctggaggaaatggcggaggtggaaaacctggacccaaggga
agtcaagggcgaccaggagaatatggtcctcaggggaattcgggaggtaaaggattcaaa
ggagatcgaggagttgatggacctaagggtattcaaggttcacaaggtagagcaggtctt
cttggagctgatgggcaaaagggtatgaaaggtgatccaggaaaacaaggactcccagga
cttgctggtaaaccgggcggaagaggaaaaaatggagaagttggcgtgactggattgaaa
ggaccaacgggtgatgcagggactctgggttctcatggctcacaaggtcttattggtcaa
aagggtaatattggttacgctggttcacgaggatcaaccggtaatccaggaccgaagggt
ctacgtggagcacgtggtcgtcctggacctcctggtccccctggaaccgcgggttacttg
acatcgtctaggtatcaacaagtcccaagaacatctggcgagaaaggtccatttagatat
taccaaggaagaacgaaagacacgaatgaaattgaactcagtgaatcacacaatgcaaat
attgacttcaaggatcaacattccgtcgaagtcgtatcagaattaatacacataacaaaa
tcgtacaagaatccagatggatcgaaaaaatatcccgcgcttacttgtcaggatcttcgg
atgtttcacccgaacttagaaaatggtcaatattgggttgatcccaacggcggagcagtc
gaagatgcagttttagtacaatgtgattttgaaacaaatgcaacatgctttgcagccaaa
gctcaaaatgtacccaaacagaaatggcttatacaaccgggtcagcacgtctggtttcgg
aaagatcttgagaaaacgagcgatttctactatgttgttgacgggagccagctacgtttt
cttaagatgcttagtgtgtctggatggcagagtgtaacttatcattgtcgaaattcactg
gcatgggaagatgataatggcgatcgaaaatattcaatcaaacttaaaggtgacaatgaa
gtcgaatatcacgcattgagcccacggaagttgaggcctaatgtcttgattgacgactgc
aagaataatgatgacaactggcgacaaacgatagtcgaaataagaactggtaatccttca
agacttcccattcgtgatgtcgctacctacgcatttgatgcaaatcatcaagaatttgga
atcgatttaggattagtttgttttgtttaa
DBGET
integrated database retrieval system
