Dendronephthya gigantea (soft corals): 114521131
Help
Entry
114521131 CDS
T06112
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114521131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgt03019
]
114521131
Messenger RNA biogenesis [BR:
dgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114521131
mRNA degradation factors
5'-3' decay
Decapping complex
114521131
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
114521131
NCBI-ProteinID:
XP_028397342
LinkDB
All DBs
Position
Unknown
AA seq
764 aa
AA seq
DB search
MADSSSSKLAEQAYSDEISFKSNMLFPMPLEENENLDSLNDETFGSGSFDSEWVDSDKPD
KMVDEFEQWKKQQKAISKKGIPLDEAPLQIPSEEKMAQAISKLDNLGIATPKLEQEDPLP
NAHAIEALWPTSPKHSSNIVSPDHSPYHMTDLLSPTHNIWGSPTSDEKISIDMDEKLADH
TKNCLDQEDNRKPFSPVLEDEAIVSALPKRISKPIRVEDVEKMGFGHQVNQLPPHLRPFA
NGVPKVRPPPGFPPNMNPRSPFPMHPPGPYGPPPIPAVPQNVAQAQAQALYTAMMNQRMP
FPQPFPRTPPSQPPHFPRPVYHSDPGHLRQRGPPMPIPHQHGRFITPQPRNTWNNQRVGR
NQDNRRRQQNFSESPGLKYIPQYYVSSDDDDEGDKGTLMTAKEKDWIIRIQLMQLTSDKP
ELDDYYFHTFERRRLAKERSQSTTGVELETNHTNKDIKMTLPHVTKGDHNYKPTKFEGSL
GQVSVGSVFHPREVVQVGDSGKPKGPVGSLKETKKKYQLLLTIEKGFDQILPIEDLERMV
LQVPQDVRPQLRERRERLCQRCFDLVNLTPSKDSNKKYDDDTLIQMLSVRKGRRFLSKIL
RLVRENQRNEIALAITRNLRVFAKKNVHQEETDSLCDGVSDVIRSSPDRIIEHHHNVVGN
DNSVIHLFSSRFTLRILTILLKTLSELSKNIGENSLQIQTVWLSFLSVVCQDFVSSSPKV
LIKNYTDVQNIVDILSNNVDDDKLLVIREHFRLLENADIRSPQR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggcggactctagttcatcaaagttggccgaacaggcttattcggacgaaatttcattc
aaatcgaatatgcttttccccatgcccctggaagaaaacgaaaatttagactcgttaaat
gatgaaacgtttggctcaggatcattcgatagtgaatgggtagattcagataaacctgat
aagatggttgatgaatttgagcaatggaagaagcagcaaaaggcaatatctaagaagggt
atcccacttgatgaggcacccttgcagattccaagtgaggaaaaaatggcacaagctatt
tcaaaattggataatcttggcatcgcaactcccaaactggagcaagaagaccctctccca
aatgctcatgctatagaggctttatggcccacctcaccaaaacatagtagcaacattgtt
tcacctgaccactcaccttaccacatgactgatttgctttctccaactcacaatatctgg
ggatcacctacaagtgatgaaaaaatttccattgacatggacgaaaagctcgcagatcac
acgaaaaactgtcttgatcaagaagataatagaaaaccattttcccctgttctggaggac
gaggccatagtttcggcccttccgaagagaatatcgaagccaatacgtgtggaagacgta
gaaaagatgggttttggtcaccaggttaatcagttaccacctcatctccggccgtttgcg
aatggtgtacccaaggtcagacctcctccaggattccctccaaatatgaacccccggagt
ccatttccaatgcacccacccggtccctatggcccccctcctattcccgcagttcctcaa
aatgttgctcaggcacaagctcaggcgttatacacagctatgatgaatcaaaggatgcct
ttcccccaacctttcccccgcacaccgccttctcaaccaccacacttcccgcgacctgtt
tatcactccgatccaggtcatttaaggcagcgaggtccaccgatgccaatacctcaccaa
cacggtcgctttatcactccccagccacgaaacacctggaacaatcagcgtgttggccgt
aaccaagacaaccgtaggcgtcagcaaaatttctcggaatcccctggtttgaaatacatc
ccacaatactacgtgagcagcgatgatgacgatgagggtgataaagggacactgatgacc
gctaaagagaaagactggataattaggatacaattgatgcaattgacaagtgataaacca
gagttggatgactattattttcatacctttgagagacgtcgtttggctaaagagagatct
caaagtacaactggagtggaactggaaacaaaccatactaataaggatataaagatgact
ttacctcacgtcactaaaggcgatcacaactacaaaccaaccaagtttgaaggatctctc
ggtcaagtttccgtcggctctgtttttcatccacgcgaggtcgttcaagttggtgattca
ggaaagcctaaaggacctgttggctctttaaaagaaaccaaaaagaaataccaattgctc
ttaacaattgaaaagggctttgatcaaattctaccaatagaggacttagaacgcatggtt
cttcaagtaccacaagacgtcagaccacagttgcgtgagagacgtgaaagattgtgccaa
cgttgctttgacttggtgaatttaacgccatcaaaagactctaataagaaatacgatgat
gatacgttaatacaaatgctctcagtgagaaaaggaagacgatttctcagcaaaatactc
cgtcttgtcagagagaaccaaagaaatgagattgctcttgcgatcacaagaaatctacgg
gtatttgcgaaaaaaaatgttcatcaagaagaaacagacagcttatgtgatggtgtttca
gacgtgatcaggtcgtcacctgacagaatcatcgaacatcatcacaatgttgttggcaac
gacaattccgtcatacatttattctctagtaggttcacgttaagaattcttaccattttg
ttaaaaacattgtctgaactttcaaaaaatattggcgaaaacagtttacaaatacaaaca
gtgtggctttcgtttctttctgttgtctgtcaagattttgtttcgtcttctccaaaagta
ttgattaagaattacaccgatgttcaaaatattgttgatatattgtcgaataatgttgat
gatgataaattgttggtgattcgagaacatttccggcttcttgaaaatgctgatattcgt
tcaccccagagataa
DBGET
integrated database retrieval system
