Dendronephthya gigantea (soft corals): 114521825
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Entry
114521825 CDS
T06112
Name
(RefSeq) tRNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dgt
Dendronephthya gigantea (soft corals)
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dgt03016
]
114521825
Enzymes [BR:
dgt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
114521825
Transfer RNA biogenesis [BR:
dgt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114521825
Prokaryotic type
tRNA splicing ligases
114521825
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
114521825
NCBI-ProteinID:
XP_028398170
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRTFQEECGYIERLSSHSYRIKKGFVDNMKVEGIFYINNQLETLMFDELRHWCNSAGV
GGFIPGVKQIANVASLPGIVGKSVGLPDVHSGYGFAIGNMAAFDMNDPSAVVSPGGVGFD
INCGVRLIRTNLDEKDVLPRKEQLAQSLFDHIPVGVGSKGIIPMAAKDLEEALEMGIDWS
LREGYAWAEDKEHCEEYGRMLQADSSKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFD
NFAAKKMGVDHKGQVCVMIHSGSRGLGHQVATDALVSMEKAMKRDKIDVNDRQLACATIS
SQEGQDYLKGMAAAANYAWVNRSSMTFLTRQAFAKVFGSTPDDLDMQIIYDVSHNIAKVE
EHMIDNKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGM
NETFGTTCHGAGRALSRAKSRRNLDYQDVLAKLAEKGISIRVASPKLVMEEAPESYKNVT
DVVDTCHAAGISKKAIKLRPVAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtaagaacatttcaagaggaatgcggctatatagaaaggctttctagccacagc
tatagaattaagaaagggttcgttgataatatgaaggttgaaggaatattttatatcaat
aaccagttggaaactttgatgtttgatgaactaagacattggtgtaattctgcaggtgtt
ggaggctttattccaggtgtcaaacagattgcaaatgttgcatctcttccaggaatagtt
ggaaaatctgtgggcttgcctgatgtacattcaggatatggatttgcaattggtaatatg
gcagcatttgatatgaatgatccaagtgcagttgtgtctccaggtggggttggatttgat
ataaactgtggggtgaggttaattcgtactaacctggatgaaaaagatgttttaccaaga
aaagaacagcttgctcagtccttatttgatcacattcctgttggtgttggttcaaaaggc
atcataccaatggcagcaaaagatcttgaagaagcgctggagatgggaattgactggtca
ttacgcgaaggttatgcctgggctgaagacaaggaacattgtgaagaatatggccgaatg
cttcaagcggactcctcaaaagtcagtcctcgagcgaaaaaacgcggtctgccacagctg
ggaactctcggcgctggaaaccattacgctgagattcaggtcgtcgatgaaatcttcgat
aattttgctgctaaaaaaatgggcgtggaccacaaaggacaggtgtgtgtgatgatacac
agcggcagtcgtggtcttggtcatcaggttgcaacagacgcgttagtttcaatggagaag
gcaatgaaacgagacaagattgacgtaaacgatagacagcttgcttgtgccaccatcagc
tcacaggaaggtcaggattatttgaaaggaatggctgcagctgctaactacgcctgggtg
aacagatcttctatgactttcttaactagacaggcatttgcgaaagtgtttggatcaaca
ccagatgacttggatatgcaaataatttatgatgtctcacacaacattgcgaaagtcgaa
gaacacatgatcgataataaacagaaaacactgctggttcatcgtaagggatctacgcga
gcattccctcctcatcacccacttattcctgtcgattatcagttgactggacaaccagtt
ctaattggcggcacaatgggcacgtgcagttacgtgctgacaggaacggagaaaggaatg
aatgagacatttggaacgacctgtcatggagctggacgcgctttgtctcgtgcgaaatct
aggcgtaatctcgactatcaagatgtgcttgctaagttagcggaaaaagggatatccatc
agagtcgcttcacctaagttggttatggaggaggctccagaatcgtacaagaatgtcacc
gacgtcgttgatacgtgccatgccgctgggataagcaagaaagcaatcaaattaagacct
gttgctgttatcaaaggatag
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