Dendronephthya gigantea (soft corals): 114522606
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Entry
114522606 CDS
T06112
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114522606
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dgt00536
]
114522606
Glycosaminoglycan binding proteins [BR:
dgt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114522606
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
WAP
Motif
Other DBs
NCBI-GeneID:
114522606
NCBI-ProteinID:
XP_028399146
LinkDB
All DBs
Position
Unknown
AA seq
1410 aa
AA seq
DB search
MYTRLCLCLLVFVSTWQEIVSQRPGTCPIPSPICGREPEDTCTSDDECGPRQKCCVPHEC
RPGTTTCIDAANLPSGKGPKGPKGPPGPNGFPGDPGRQGPPGIRGPTGGPGPDGDPGDGG
RPGPPGPGVAFNPADDDRGKGPGPNEYQYIPGPAGPAGPPGPPGRSGPPGREGNRGDPGI
PGEAGASGDPGQPGLKGVKGRDGTPGERGPAGDPGSVGEGGLDGPQGPQGRQGRQGLQGS
KGERGQTGAVGDAGEQGMPGDNGEPGDPGKDGRDGQPGQPGQPGSKGAQGVKGPQGASGL
AGVSGPPGGQGPSGSPGIPGSPGAPGANGEKGETGIVGNPGNQGRIGDTGPRGSKGSKGA
RGAEGVQGGPGAKGDRGGIGEPGPTGYQGSPGSPGPPGPPGTSGARGERGRNGQSGLAGP
VGPKGNQGLPGPPGNQGDPGVSGKSGPPGRTGRQGAPGPSGVKGDPGFAGALGRTGPTGP
KGDQGLPGGRGDNGQKGARGKDGAAGPKGSRGGRGPPGPTGQNGVDGKPGSQGAAGNTGQ
VGPPGVAGQAGPQGPAGPTGNKGEQGSQGIEGDVGADGPKGEKGDRGVQGAQGRPGNDGE
DGADGEPGLAGDTGPQGAQGERGEQGLQGAVGPAGSKGYQGADGQPGKRGEQGAQGESGE
QGAAGFAGQPGKPGALGEAGADGQPGPEGAMGPPGMMGRRGPVGLPGVPGLPGENGEKGG
KGPKGNPGRDGKPGQDGRPGRNGNPGAQGRPGPSGPKGERGDIGGRGADGSPGERGPPGN
AGAAGDQGQAGAPGQQGPDGPKGSRGDKGGKGEKGLKGVAGMSGAPGGPGEQGDRGIEGD
AGSSGRPGGPGVQGARGETGPVGPAGSPGLPGVAGDDGLGGAKGNRGQPGPDGKTGPPGP
PGNPGLDGENGQNGEAGDSGDAGERGATGAKGSKGATGYPGPQGIQGLTGKAGPKGDAGD
SGPVGDEGGDGEKGYDGGRGANGADGADGEDGDDGADSDESGDPGQAGEQGPRGPDGRPG
AIGAPGPLGPDGQPGIDGPPGNFGNRGDAGPKGVKGQPGPDGDDGETGTVGETGVEGDDG
AKGPKGDMGAPGTRGPPGDAGDDGKPGNPGHGGNQGKLGVPGPNGKNGPPGAPGVAGPNG
RRGPPGEDGPAGRSGATGPPGPPGDPGSPGNAGPPGVLIRQEASQVVVEKGPRFYSSNQD
FVTDDTLVDDVSVVKKATESILAMMEKMDGREASSAARSCRDLKMEYPSAPDGEYWIDPD
WGSHGNAFKAKCDFTLRETCIKSLNSKKTNDNEEFEYADDVQMTFLRLLSSTVRQQITYH
CKNSMAFDGKLKSINLIGENEIDINMNSPTKYRPTILLDECKKNDNMWHKTIFEVKTEQK
QRLPIINVTPFDTGVGKQHKFEAGDVCFVW
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgtatactcgactctgcctttgtttgctagtttttgtgagtacttggcaggagattgta
tcacaaaggccaggtacatgccctattccatccccaatttgtggtcgagaacctgaagat
acgtgtacaagcgatgatgaatgtggtccaaggcaaaaatgctgtgtgccacatgaatgt
cgaccgggaactacgacttgtatagacgcggcaaatctcccttctgggaagggacctaaa
ggaccaaaaggcccaccaggacctaatggttttccaggtgatccaggaaggcaaggtcca
ccaggaataaggggtcccaccggtggaccaggcccagatggtgacccaggtgatggaggc
cgaccaggcccacctggaccaggcgtagcttttaatcctgctgatgatgatcgtggtaaa
ggtcctggacctaacgagtatcaatacattcctggtccagctggcccagcaggtcctcct
ggtccccctggaagatctggcccccctggtcgagagggtaaccgaggtgaccctggtata
cctggagaggctggtgcaagtggagatcctggacaaccaggtctgaaaggtgtaaaaggt
cgtgatggaacacctggagaacgaggtcccgctggtgatccaggttctgtaggtgaaggt
ggtcttgatggtcctcaggggcctcaagggagacaaggccgacaaggtctacaaggctct
aaaggagaacgtggtcaaactggtgctgttggtgatgcaggtgaacaaggcatgcccggg
gataatggggaacctggtgaccctggaaaagatggaagagatggacagcctggccagcct
ggtcagcctggttctaagggtgcgcaaggagtcaagggtcctcagggtgctagtggattg
gctggtgtttctgggccacctggtggacagggtccatctggttcacctggtatcccaggt
agtcctggtgcccccggtgcaaatggtgaaaagggagaaactggaatagttggaaatcct
ggaaatcaaggacgaattggtgatacaggcccaagaggcagcaaaggttccaaaggtgca
cgtggggctgaaggtgtgcaaggtggccctggagccaagggagatcggggtggcattgga
gaacctggaccaactggataccaaggaagccctggcagtcctggtccccctggtccacct
ggaacatctggtgcacgtggagaaaggggtcgcaacggacaaagcggacttgcaggtcca
gtcggacctaaaggaaatcagggattacccggcccacctggaaaccaaggtgatcctggt
gtcagtggaaaatctggtcccccaggaagaacagggcgtcaaggtgcacctggtccttca
ggagttaagggtgatccaggctttgctggtgcattgggacgtacaggacctactggacct
aagggtgatcaaggtcttccaggagggcgtggagataatggacagaaaggagccaggggc
aaagatggtgcagctgggccaaagggttcgcggggtggtcgtggacccccaggtcctact
ggacaaaatggtgttgatggaaagcctggtagccagggtgctgctggaaataccggccaa
gttggacccccaggtgtagcaggtcaagcagggcctcaaggtcccgctggtcctactggt
aacaaaggagaacagggctctcaaggtatcgaaggtgatgttggtgcagatggtcctaaa
ggagagaagggtgatcgcggcgtgcaaggggctcagggacgtcctggaaatgatggcgaa
gatggtgctgatggggagccaggtttggctggagatactggacctcaaggagctcagggt
gagcgtggtgaacaaggtctacaaggtgctgttgggcctgctggaagcaagggttaccaa
ggggcagatggtcaacctggcaagcggggtgaacagggagcacaaggagaatctggagaa
caaggtgcagctggatttgcgggtcaacctggaaaacctggtgcactcggtgaagctggt
gctgatggccaacctggacctgaaggtgcaatgggacctcctggcatgatgggacgtcgt
ggtccagtcggtcttccaggtgtacccggtcttcccggcgaaaacggagagaagggcggc
aagggtccaaaaggtaatcctggtcgtgatggtaaacctggccaagatggtcgacctggt
agaaatggtaatcctggtgcccaaggacgtcctggtcccagtggccctaagggtgagcga
ggtgacatcggaggtcgtggcgcagatggatcacctggtgaacgtggtcctccaggtaat
gcaggtgctgctggagaccaaggtcaagcaggagctcccggtcaacaaggacctgatgga
cctaagggcagtcgaggtgataaaggtggtaagggcgagaaaggtttgaagggtgtagct
ggaatgtctggagcccctggtggaccgggtgaacaaggagatcgtggtattgaaggtgac
gctggatccagtggaagacctggaggtccaggtgtacaaggagcccgaggcgagactggt
cctgtgggacctgccggatcccctggattacctggtgttgctggagatgacggattgggc
ggagctaagggtaaccgaggtcaacctggcccagatggtaaaactggaccaccaggtcct
ccgggtaatcctggattggacggcgaaaacggtcaaaatggtgaagctggagattcggga
gatgctggtgaaagaggtgccactggtgccaagggtagtaagggagccacgggatacccc
ggcccacaaggtattcaagggttaactggaaaggctggacctaagggtgatgcaggcgat
agtgggcccgtcggcgacgaaggaggagatggcgaaaagggttatgatggtggaagagga
gctaacggcgctgatggtgctgatggtgaagatggtgacgatggcgctgatagtgatgaa
tctggagaccccggacaagccggagaacagggtcctagaggtcctgatggacgtcccgga
gctattggtgcaccaggtccattaggccctgatggtcaacctggtattgatggaccacct
ggaaattttggtaaccggggtgatgcaggaccgaaaggagtaaagggacagcctggtccc
gacggagacgacggagaaaccggtaccgttggtgaaaccggtgttgagggtgacgatggt
gctaagggaccaaaaggcgacatgggcgccccaggaacacgaggaccgcctggtgatgct
ggtgacgatggcaaacctggtaatcctggtcatggtggtaatcaaggaaaattgggtgta
cctggtccaaatggtaagaacggtccccctggagcaccaggtgttgcgggtcccaacggc
cgacgcggtccaccaggtgaagatggtcctgcaggaagaagtggagctactggacctccc
ggcccacctggtgatcccggttcacctggtaatgctggtccacctggagtccttatcagg
caagaagcttcacaagtcgttgtagaaaagggacctcgattctactcaagcaatcaggac
tttgtcactgacgacactttggtcgatgacgtaagcgtcgttaagaaggcaacagaaagc
atccttgctatgatggaaaagatggatggacgtgaagcctcatcagcagcacgatcttgc
cgagatttgaaaatggaatatccctcagccccagatggcgaatactggatcgatcctgac
tggggtagccatggcaacgctttcaaagccaaatgtgactttactctacgtgaaacatgc
attaaatctctcaattctaagaaaactaacgacaacgaagaattcgaatacgccgatgat
gttcaaatgaccttcctccgattattaagtagcaccgttcgtcaacaaataacatatcat
tgcaagaactcgatggcgtttgatggcaaactgaagtctatcaacttgatcggagaaaac
gagattgatattaatatgaacagtccaactaaatacagacccacaattctcctagatgaa
tgcaagaaaaatgataatatgtggcataagactatattcgaagtaaaaacggagcagaag
caacggctaccgattatcaacgttacaccatttgacacgggcgtaggaaaacaacacaag
tttgaagcgggagatgtatgctttgtgtggtaa
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