Dendronephthya gigantea (soft corals): 114522989
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Entry
114522989 CDS
T06112
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
114522989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dgt03021
]
114522989
03019 Messenger RNA biogenesis [BR:
dgt03019
]
114522989
Transcription machinery [BR:
dgt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
114522989
RNA polymerase I system
114522989
Messenger RNA biogenesis [BR:
dgt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
114522989
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
Spt5-NGN
KOW2_Spt5
KOWx_SPT5
KOW7_SPT5
KOW6_SPT5
KOW1_SPT5
Spt5_N
GPKOW_C
KN17_SH3
Motif
Other DBs
NCBI-GeneID:
114522989
NCBI-ProteinID:
XP_028399581
LinkDB
All DBs
Position
Unknown
AA seq
1017 aa
AA seq
DB search
MSDSEEGYSENEEEEVMDEDVDEDDDDDIEDEEEEEDEDDYDRKGQKRRKVGASAFIDAE
AEVDEDDEEGTEAEEGFEGFEDHSERDEEHTEDISGARRLQQMLKERSDEDLEEYYRRKY
VETSRKYSKKDYDHPRGIEQQSLLPGVKDPNLWLVKCRIGEEKATVIAMMRKALSQQFTD
EPLQVKSAIAVEGLKGYIYIEAYKQTHVKQAIEGIGTLKIGQWNQKMVPVKEMTDVLNVV
KDLVQLKAKQWVRLKRGIFKDDLAQIDYVHPSKNQVTLKMIPRIDYAKPRGNKAPEQEDQ
EKKKRFRKPPPKLFDPEAVRGIGGEIHQDGDFYLFEGNRYRQGFLYKNMAISALVTEGIK
PTLSELEKFESTSEDIDIELPTKSSKEDAESQFAPGDNVEVVEGELINLQGKIVSVEGNK
IVMLPFHEDLKEPLNFPSSELKKFFKVGDHVKVIHGKYEGDTGLILRVLGKTAILFSDLT
MHELEALLKDLQLCSERSSGVDSLGHHQWGDLVQLDPQTVGVIVRIERETFSILNQHGKV
SQVRQQAVAKRKENKHAVALDCDQNTIQVRDVVKVVDGPHKDLQGEVKFVYRGFAFLSSK
LVVENGGIIVCRTKQLQLAGGGKATTDSIGGFGGFGGFAPRSPRISSPARDPGGAGGGAG
GASPSGRGGFGRGRGRPGRDLTLIGKTIRISQGPYKGYIGIVKDATETTARVELHSNCKT
ISVDRSRINVVGAPTRGGSTHSRTPMYGSQTPMYGSQTPGSRTPMYGSQTPTHDGSRTPH
YGSMTPSHDGSRTPLHGGAWDPSSANTPARSEAEFDYSLDVPTPSPVGGYGTPNPATPGG
FTAPYTPGTPSGMYGSEPTYSPYVDSPSPAGYANPVTPGSANPSPISPGFNPHTPGASLE
VEMPHEWVTQDIEVTISESYQDSQLVSKKGVIRNVVGGTSTVYLYDEKRDVSIPSKHLTA
LQPAKHDKVKLIHGDDRDSTGTLIQIDGNDAIIKMDLNDKLVVCDISSLARLAPSTV
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatagcgaagaaggttattcagagaacgaagaggaagaagttatggatgaggac
gtggatgaagatgatgatgatgatattgaggatgaagaagaagaagaagacgaagatgat
tacgacaggaagggacagaagcgacggaaggttggagcaagtgccttcattgatgctgaa
gcagaggttgacgaggatgatgaggaaggaactgaagcagaggaaggttttgaaggattt
gaagaccattctgaacgagatgaagagcacacagaagatatatcgggtgcaaggcgattg
cagcaaatgttgaaggagcgaagtgatgaagatttggaagaatactaccgaaggaaatat
gttgaaacatcaagaaaatacagcaagaaggattatgaccatcctcgaggaattgaacaa
caaagtttactgccgggagtaaaggatccaaatctttggttggtgaagtgtaggattgga
gaagaaaaggcaacagtcattgcaatgatgagaaaagcactttcacaacagttcaccgat
gagcctctacaagtgaagtctgcaattgctgttgaaggtcttaaaggctatatttacatt
gaggcgtacaaacaaactcatgtcaaacaggctattgaaggcattgggacactcaaaatt
ggccagtggaaccagaaaatggttccggtgaaagaaatgactgacgttcttaatgtagtt
aaagatctggttcagttgaaagctaaacaatgggtccgcttaaaacgaggcattttcaaa
gatgacttggcccagattgactatgtccacccttcaaagaaccaggtcactctgaaaatg
attcctcgcattgactacgcaaaacccagaggaaacaaagcgcctgagcaggaagaccag
gagaagaagaaacgattccgaaaaccgcctccaaaattgttcgatcccgaagctgtgaga
ggaatcggcggcgaaattcatcaagatggagatttctatcttttcgaaggaaatcgttac
cgtcagggtttcttgtataagaatatggcgatatctgctcttgtcaccgaaggaattaag
ccaactctttccgagttagaaaagtttgaaagcacctccgaagatattgacattgaatta
cctacgaaaagttcaaaggaggatgctgaaagtcaatttgccccaggagacaatgtcgaa
gtcgtcgagggagagttgatcaatttacaaggcaaaattgtcagcgttgaaggaaataag
atcgttatgttgccttttcatgaagatctaaaggaacctctgaatttcccatcctcagag
ctgaagaaattcttcaaagttggagatcacgtgaaagtcattcacggaaaatatgaagga
gatacaggcttgatacttcgtgttttaggaaagacagccattttgttttcagatcttacg
atgcacgagcttgaagcactgttgaaagatcttcagttatgttccgaaagaagcagtggt
gtagattctctgggtcatcatcaatggggcgacttggttcagctagatcctcaaactgtc
ggtgtgattgtccgtattgaaagagagacattttcgatcctaaatcaacatgggaaagtc
tcccaagtgcggcagcaagctgtggccaaacgtaaagaaaataaacacgccgtcgctctg
gattgcgaccagaataccattcaagttcgagacgtggttaaggtcgttgacggaccccac
aaagacttgcagggggaagtcaaatttgtctaccgtggcttcgcgtttctctcttcgaaa
ttggtcgtggaaaatggcgggatcatcgtttgcagaaccaagcaactacagctagccggt
ggtgggaaggctactacggattctatcggtggttttggtggattcggaggcttcgctcct
cgttctccgagaatatcaagtcctgctcgtgatcctggcggtgcaggtggaggtgcaggt
ggagcatctccgtcaggcagaggtgggtttggtcgtggtcgagggaggcctggaagagac
ctcacgctgatcggaaagaccataaggatctctcaaggtccttataaaggctacattggg
atagtgaaagacgcgactgaaaccacagcacgagtcgagctacacagcaattgtaaaaca
atttctgtcgacagatccagaatcaatgtcgttggtgccccgacgcgcggtgggtctacg
cattcaagaacccccatgtacggctcacagacaccaatgtatgggtcccagacccctggt
tcaagaacaccaatgtatggttcccagactcctacccacgatggaagcagaacaccacat
tatggttcgatgacgccatcacatgacggttcgcgcacacctctccatggtggggcttgg
gacccaagctcggcaaacactcctgcgaggtctgaggccgagtttgattacagcttggac
gttccaacgccatcgcccgtcggtggttatggtacgccgaacccagcgacccccggggga
tttaccgccccctacactccgggtaccccaagtggaatgtatggttctgaacccacctac
tccccgtacgtggactccccctctccagctggatatgcgaaccctgtcacacctggtagt
gcaaaccctagtccaatttcccccgggtttaacccccacaccccaggagcgagtttggaa
gtggagatgccacacgagtgggtgacccaagatattgaagtgacaatcagcgagtcgtat
caggattctcagctggtttccaagaaaggtgttatccgtaacgtggttggtggaaccagt
actgtgtatctgtatgatgagaaacgtgacgtcagcattcccagcaagcacctcaccgca
ttacagccagccaaacacgataaggtgaagttgattcatggggatgacagggacagcaca
gggaccctgatccagattgacggaaatgatgcaattataaaaatggatttgaatgataaa
ctagttgtttgtgatatcagttcactggcgagattggctccgtccaccgtgtag
DBGET
integrated database retrieval system
