Dendronephthya gigantea (soft corals): 114524717
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Entry
114524717 CDS
T06112
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03020
RNA polymerase
dgt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114524717
09124 Replication and repair
03420 Nucleotide excision repair
114524717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dgt03021
]
114524717
03400 DNA repair and recombination proteins [BR:
dgt03400
]
114524717
Enzymes [BR:
dgt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114524717
Transcription machinery [BR:
dgt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114524717
DNA repair and recombination proteins [BR:
dgt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114524717
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
Motif
Other DBs
NCBI-GeneID:
114524717
NCBI-ProteinID:
XP_028401685
LinkDB
All DBs
Position
Unknown
AA seq
2032 aa
AA seq
DB search
MAVGSGSPAPLKKVQRVQFGIFSPDELKQMSVTEGGVKYSETMEGGRPKLNGLMDPRQGC
SDRFSRCQTCAGNMTECPGHFGHIELSKPVFHVALIPKIIKVLRCVCFYCSKLLVDQDHP
KIKEIMLKTHGHARKRIVHVYELCKGKKICEGGDEIDDKLDGAAGDGEVKKGHGGCGRYQ
PQIRRQGLELTAEWKHVNEDSQEKKIVLTAERVHEIFKRISDEECTIIGMDPQNCRPDWM
ILTVLPVPPLPVRPSIVMHGGSARSQDDLTHKLSDVVKCNNGLKRNELNGAAAHIIAEDT
KMLQYHVSTLFDNEIPGLPKAMQKSGRPLKSIKQRLKSKEGRIRGNLMGKRVDFSARAVI
TPDPNLSIDQVGVPRMIAQNLTFPEIVTPFNIDRMQELVRRGSSHYPGAKYIIRDNGDRI
DLRFHPKPSDLHLQYGYKVERHLRDEDLIVFNRQPTLHKMSMMGHRVKVLPWSTFRLNLS
VTTPYNADFDGDEMNLHVPQSLEARAEISELMMVPRQVITPQSNRPVMGIVQDSLTAVRK
FTKRDVMMEKDVVMNLLMWLPSWNGKLPVPAILKPKPLWTGKQIFSILIPGNVNMIRAHS
THPDEEDDGPYRHISPGDTKVLVEDGDLLSGIICKKSLGTSSGSLVHIVAMELGHEVAKN
FYGEIQTCVNNWLLIEGHSIGIGDCIADNETYEVIQKTTKKAKDDVIQVIEKAHNDELEP
TPGNTLRQTFENQVNRILNDCRDKTGSSAQKSLSEFNNFKAMVVAGSKGSKINISQVIAV
VGQQNVEGKRIPFGFNHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGL
IDTAVKTSETGYIQRRLIKAMESVMVAYDGTIRNSVNQVIQLRYGEDGMDATHIEFQNMP
SLKPNTAAFERKFHFESGIERRMKRFLQDEIVRDIVGSAAAHHELEAEFSQLEKDREVLR
SIFPSGNSKVALPVNLGRLIWNAQKTFHINKRIPSDLNPVKIVQDVRKLSDRLVVVKGDD
PISKQAQTNATLLFNILLRSTLCSKRVLEEFHLSSQAFDWIVGEIETRFNLAQVQPGEMV
GPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNVSKRPKTPSLTVFLVGKP
ARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQDFVNVYYEMPDFDVTRI
SPWLLRIELDRKRMTDKKLTMEQISEKINMAFGDDLNCIFNDDNAEKLVLRIRIMNNDEN
KMQEEEEQLDKMDDDVFLRCIEANMLTDMTLQGIEAISKVYMHLPQQDSKKRIVITEQGD
FKALPEWLLETDGVSLMRVLSDQDVDPVRTTSNDICEIFSVLGIEAVRKAVEREMNHVIS
FDGSYVNYRHLALLCDVMTCKGHLMAITRHGINRQDCGALMRCSFEETVDVLMEAASHGE
VDHLLGVSESIIMGQLPKIGTGCFDLMLDSEKCKNGMEIPTHMLASGLFGSGPMAAPGMF
FGLANSPTSAMSPQMTPWNQGATPNYQEAWSPGMGSGMTPGGAGFSPAGSDASGFSPGGG
FSPGGWSPNPGSPGSPGGPVSPYIPSPGGAASYSPASPAFMPSSPSMSPTSPSYSPTSPG
YSPTSPNAGGFTPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSSPSYSPSSPSYSPSSPSYTPESNRNY
SPSSPSYSPSSPKYSPSSPSYSPTSPSYSPTSPKYSPTSPTYSPTSPSYTPSSPKYSPTS
PTYSPTSPTYSPTSPNYSPTSPQYSPASPQYSPTSPQYSPSSPQYSPSSPQYSPSSPQYS
PNSPTSPHYSPSSPQYSPSSPNYSPTSPQYSTGEDYSPVAPRYSPSSPTYSPSTPGGASN
VSPQYSPSSPQYSPTSPSYTPATPGYSPGSAYSPSSPVYSPDDGEEQKKKKK
NT seq
6099 nt
NT seq
+upstream
nt +downstream
nt
atggctgttggatctggttctccagcacctttaaagaaggtccaaagagtccagtttggc
atattcagtcctgatgaacttaaacaaatgtcagtgaccgagggaggagtaaaatactca
gaaaccatggagggaggaagaccaaagttgaatggcttgatggaccctcgtcagggctgc
agtgatcgcttttcacgatgtcagacatgtgctggaaatatgaccgagtgccctggtcac
tttggacacattgagctttcaaaaccagtattccatgttgctttaattcctaaaatcatt
aaagttttaagatgtgtgtgcttttactgttccaaactacttgttgatcaggaccatcca
aaaatcaaggaaatcatgttaaaaacacatggccatgcaagaaaaagaatagtccatgtt
tatgaactctgtaaaggaaaaaagatttgtgaaggtggtgatgaaatagatgacaaactt
gatggtgctgcaggtgatggtgaagtaaaaaagggtcatggtggttgcggtcgttaccag
ccacaaatcaggaggcaaggtctggagcttactgctgagtggaaacacgtgaatgaggat
tcacaggaaaagaaaattgtcttgacggcagaaagggttcacgagatctttaaaagaatt
tcagatgaagaatgcacaatcattggcatggatcctcagaattgtcgcccggattggatg
attttgactgtgttgcctgtgcctccattacctgtccgaccttccattgtcatgcacggt
ggaagtgctagaagtcaagatgatttgactcacaagctttcagatgttgttaaatgtaat
aatggccttaaaagaaatgaactgaatggtgcagccgctcatatcatcgctgaagatacg
aagatgttacagtatcatgtatcaacgttgtttgataatgaaatccccggcttacctaag
gcaatgcaaaagtcagggcgtcctttgaaatcaataaagcaaagattgaaaagcaaagaa
ggtcgtattcgtggtaatctcatgggaaaacgagttgatttctctgcccgtgctgttatt
acaccagatccgaatctttcaattgatcaagtgggcgttccgagaatgatcgcgcagaat
ttaactttcccagaaattgtgacaccattcaatattgatcgcatgcaggaactggttcgt
cgtggtagttctcattatcctggagcaaaatatatcattcgcgataatggagaccgaatt
gatttacgtttccatccaaaacccagcgatttgcatcttcaatatggctacaaggtggag
cgtcatttgagagacgaagatttgattgtatttaatcgtcaaccaactttgcacaaaatg
tctatgatgggtcatcgcgtaaaggttttgccttggtccacgtttcgtcttaatctcagt
gtcacaacaccttacaacgctgattttgacggtgatgaaatgaatcttcacgtgccacaa
tcgcttgaagcacgtgctgaaatatccgaattaatgatggtgccacgacaggttatcaca
ccacaatcaaacagacccgtcatgggtattgtgcaagattcgctaacagctgttcggaaa
tttaccaagagggatgttatgatggaaaaggatgtcgttatgaacttgttgatgtggtta
ccaagctggaacggcaagttaccagtcccagcaatattgaaacccaaaccattatggact
ggaaaacagatcttctcaatcttaatccctggcaatgtcaatatgattagagctcacagt
acccatcctgatgaagaagacgatggaccatacagacacatttcacctggtgatacaaag
gtattggtggaagatggtgatctactgtcaggaattatctgtaagaaaagtttaggaacg
tcgtccggcagtttggttcatatcgtcgccatggagttaggccatgaagtcgctaagaat
ttttatggagagatccagacttgtgttaacaactggctgttgattgagggacatagtatt
ggcataggagattgtattgctgataacgaaacgtacgaggttattcagaaaacgacgaaa
aaagcaaaggatgacgttattcaggttatcgagaaggcccacaatgacgaacttgaacca
actcctggtaataccttgagacagacgtttgaaaaccaggtgaatcgtatcctaaatgac
tgtcgtgacaagactggtagcagcgctcagaaaagtttatcagagttcaataatttcaaa
gctatggttgtagctggctctaaaggttccaaaatcaacatttcacaggttattgctgtg
gtaggacagcagaacgttgagggtaaacgaatcccattcggatttaaccatcgtacatta
cctcattttatcaaagatgattatggtcctgagagtagaggttttgttgagaactcgtat
cttgctggccttacaccaaccgagtttttctttcacgccatgggtggtcgtgaaggtctg
attgataccgctgtgaaaactagtgaaactggttacattcagcgtcgtctgatcaaagct
atggaaagtgttatggtagcttacgatggaacaatacgtaattctgtcaatcaagttatt
cagttaagatatggtgaagatggaatggatgcgacccacatcgagtttcaaaatatgcct
tccctaaaaccgaatactgcagcttttgaaagaaagtttcattttgaatctggaattgag
aggagaatgaaacgatttcttcaggatgaaatagttcgggatatcgtgggaagtgctgct
gctcatcatgaactagaagcagagttttcccaattagagaaggatcgtgaggtgttgaga
tccatatttccttctggtaacagcaaggttgccctccctgtaaacctcggtcgtttgatt
tggaatgctcagaagacatttcacattaacaagcggatacccagtgatttgaatcctgtc
aagattgttcaagatgttcgtaaactaagtgacaggcttgtggtggtaaaaggtgatgat
cccatcagtaaacaagctcaaactaatgcgaccttgttattcaacatattactcagatca
acattatgctccaaaagagtattggaagaatttcatttgtcctctcaggccttcgactgg
attgttggagagatcgagacaaggtttaacttagcacaggttcaaccaggggagatggta
ggcccacttgcggctcagagtcttggtgaacctgccactcagatgaccttgaatactttc
cattatgctggtgtctccgccaagaacgtaactttgggcgtaccaagattgaaagaaatc
atgaacgtatcaaaaagaccgaagacgccctcgttgaccgtgtttctagtcggcaaaccg
gctagagatgcggaaaaagcgaaggacgtgctttgtcgattggaacacacgacattgcga
aaggtaacagccaacacagctatatattatgatcccgatcctcagaacactgtcatttct
gaagatcaagacttcgtgaatgtctactatgaaatgcctgactttgacgtcacacgaatc
tcgccttggttgttgcgtattgagctggacagaaaacgaatgacagacaagaagctgacc
atggaacaaatatctgagaaaattaatatggcatttggagatgatctgaattgtattttt
aacgacgataatgccgagaaattggtgcttcgtatcaggatcatgaataatgatgaaaat
aagatgcaggaggaagaggagcagctcgataagatggatgacgatgtctttttgcgttgt
atcgaagctaatatgttgaccgatatgacattgcaaggaatcgaagcaatttctaaagtt
tatatgcatttaccacaacaagatagtaagaaaagaattgtaataactgagcaaggagac
tttaaagcactaccagaatggctgctggaaacagatggtgttagtttaatgagagttttg
agcgatcaagatgtagatccagtaaggacaacctcgaatgatatctgtgaaatattttcc
gtgcttggtatcgaggctgtgcggaaagcagttgaacgggaaatgaatcacgtcatctcg
tttgatggttcgtacgtaaactatcgtcatttagcgttgctgtgtgacgtcatgacgtgt
aaagggcatttaatggccattactcggcacggaattaacagacaagattgtggagctctt
atgagatgctcatttgaggaaactgttgacgtattaatggaggccgcttctcacggcgaa
gtagatcatttacttggagtcagcgaaagtatcattatgggtcaactacctaagattgga
actggatgttttgatctaatgttggattctgagaaatgcaaaaatggaatggaaatccca
acacatatgcttgctagtggcctgtttggaagtggaccgatggctgcgccaggaatgttc
tttggtttagcaaattctcctacctcagccatgtctcctcaaatgacaccgtggaaccaa
ggagccactccaaattatcaagaggcatggagtccaggcatgggtagtggtatgactcct
ggaggtgcagggttttctccagccggatctgatgccagtggatttagcccaggtggtggg
tttagtcctggtggttggagtccaaatcctgggtcacctggttctcctggtggacctgtc
agtccctatatccccagtccaggtggtgctgccagttattcaccagctagtcctgcgttt
atgccaagttcaccatctatgtcacctaccagtccatcttactcaccaacatcccctggt
tattcacctacatcacctaatgccggtggtttcactcctgcaagtcctagctactctcct
acttcaccctcctactccccaacctcaccatcctattccccgacttcgccgtcttactcc
ccaacttcaccgtcgtattctcctacatctccctcatatagtcctacatcaccctcttat
tctcccacttcaccatcatactccccaacttcgccctcgtattcaccaacctcaccctcc
tattcaccaacttctccatcttactcgcccacatctccctcatacagcccgacatctcca
tcctatagtcctacctcaccatcctacagtccaacctctccttcctattcaccgacatct
ccatcgtactcacccacttctccctcttattccccaacatctccgtcgtactctccaaca
tcaccctcctactcaccaacatcaccaaactacagcccttcatccccatcgtactcccca
tcttcaccatcttattctccttcttctccaagttataccccggagtcaaaccgaaactac
tcaccatcatcgccatcatattccccaagttctccgaagtactcaccatcatctccaagt
tattctccgacttctccaagttactccccaacttctccaaaatacagtcccacatcacca
acctattcacccacctccccatcgtacacaccatcatctccgaaatattctccaacctca
cccacatactccccaacatcccccacatactctccaacttcaccgaattactccccgact
tcaccacaatattctcctgcctcacctcaatattcacccacatccccacagtattctccc
tcctccccccagtattccccatcctctcctcagtactcgccaagttcacctcaatactct
ccaaactcaccgacatcaccgcattattccccaagttctccgcagtattcaccatcatct
cctaattattcccctacctctccacaatactccactggtgaagactatagtcctgttgcg
cccagatactctccatcgtcgccgacgtacagtccttcaacacccggcggtgcttcaaac
gtctccccacagtactccccttcatcaccacaatattctccaacttctccaagttataca
cctgctacacctgggtattctccggggtcagcgtattctccgtctagtcctgtgtattca
cctgacgacggtgaagagcaaaagaagaaaaagaagtga
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integrated database retrieval system
