Dendronephthya gigantea (soft corals): 114528097
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Entry
114528097 CDS
T06112
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
dgt
Dendronephthya gigantea (soft corals)
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgt03019
]
114528097
Enzymes [BR:
dgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114528097
Messenger RNA biogenesis [BR:
dgt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
114528097
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
114528097
NCBI-ProteinID:
XP_028405480
LinkDB
All DBs
Position
Unknown
AA seq
1710 aa
AA seq
DB search
MSMSSSSSEEDYDDYDESHETDERIRDLEIFIKELQPKMLNLMNEFADAEMFLIDGDSLL
MELALEKDLDWTYSGQILHLVYLFERYLHFFVRKDGIFQIIFFKNLESVWKSQPCVYLAR
KIILQHLLANVSFKVLFDFESPWDPNFFSYIKKYSPSFMLLSDGEILHEPERQRLIPENA
LRIFVLHFLKVLSLEMNCAFTYGIEFGTSTLNGFHIMHSQRFRKWKLPTPDGSGVTRAFV
SSSSLTQDINRAVVKLKSVSSMFNTECQDEVGAIDCRLLLHSVTAAVYLKLFSKGPGNQD
FHHDIIRVLFIHGVILTQVSLKYRSFSLDDFKRVFKNTTVESRLKESLEKLQFIMAEVLD
VFIQALKDEDSPRSMKGVCDAWDGRLFYQVLLLLVTSKANGSDLQLSDISNRKYESLVKV
ASSLLDDEEKLEAFPIIHCLEKHLADSTQVKNVDFKHGVLEITKKWRNVKESKDGLIKME
CLLLNEYAGKILENTSVRKLDIKDPDVAALVVSGNNFDEKYHWHSGRPLTDEYKRTEESN
NINQDKHARFMQRYGQSLHGEVTYKPIVVKDTTIKSHKKTSKISQKALAIQQDNSQTIEE
KELRKEENSWTSERKKVQQYENEGELDIALEKLDRFLKGVNKRKIKIDVQLTRARILWKM
WKDYCHTNKEDDRDGSRAESLFLTVQDLVENYKEDLSKKNKDTLGEYLDAIGFKNIVVKT
NLTTKKFEANDEYSLRTSSSRFQLHNLGDQLKRESRTDRDNRIDHFIPETWQRKMLDAVD
NKQSALIVAPTSSGKTFASFYCIEQVLKEDNDGVVVYVSPTKALVNQVSATCCVRYKKKM
PPGKSVYGVFTRDFRQNALTCQILVTVPQCLEILLLSPARQDWVEKIRYVVFDEVHCIGS
EIGAEVWEHLLLMIRCPFLALSATIRNPDDLHSWLQNAENDKHYRDTRNNTIRPNAPKSY
KVDLITYNERYNDLEKFNYLPGRSKPMIEHIHPCSVITSRQLKHSGTFPAHVSLSPRETL
AFYDAFQRVFNEEDSLLRLTPESHFQDETFITKQSVRSYENALKDEFMSYVNNNDKRVEK
VIDSLSPSRTIDWSGSKILKRDALASQIFPLVEELKEKDQLPVIVFSFDRNLCERFAERL
IHRLQAKEEELRKGKAKDKEKQEQKKAKLEKRQRDREEEVEVMRKTESSGHDSFHRQKKT
TAETACFLFDNAPPKSCSYAGIGVLDDQDAQVIVERLEKPKGIISVDEVFKEGLRRGISY
HHAGMPGKQRGVVEMLFRKKFLRVVFATGTLALGIHMPCKTAVFADDSVFLNTLQYHQIS
GRAGRRGYDRIGHVLFFGIPQAKIQRLMTVSLPRIIGNFPLNVSLVLRLLLLVNNVKERE
IAMSQVLALLQNPLICKNQPELDLQLKHHFLFSVELLVRQGLLDEKGHPQGLAGLATHLH
YHEPSNFILVTFLRDGLFHDICRSARSRDGTFSKDFLKSLVVLLSHLFARRKLHKIVLRR
NRSTSKVLLEDLPAKFKIGLQKYNKKVRDVFDLYLRTVAGHVYDTLGEDVTLPLSRTKLI
SSESYVVPSPAVTLEDKLKSIAIPYKACSAFAALSGNSDTKLYSSQDLLSNIRYQVYTDV
KVIPTLEDNVDLNAYAYDFFNHGNQKALVNENGLMQGDAYNLVKDFMLVLKSISVSLTEL
APDKEDDDVIQAFTQLAEEYESTFNEAFKR
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgagcagcagttcatccgaagaggattatgatgattatgatgaaagtcatgaa
acagatgaaagaatccgcgatctggaaatatttatcaaagaattgcaaccaaaaatgtta
aatcttatgaatgaatttgctgatgcggaaatgtttcttattgatggagactcgttgtta
atggaacttgctttagaaaaggatttagattggacttatagcggtcagatattgcatctg
gtatacctctttgaacgatacctacatttctttgtccgaaaagatggcatttttcaaatc
atcttcttcaagaatcttgaaagcgtgtggaaatcgcagccatgtgtttaccttgcacgt
aaaattatcttgcaacatcttcttgcaaatgtcagctttaaggttctgtttgattttgag
agtccttgggatcctaatttttttagttacataaagaaatattccccatcattcatgctt
ctttctgatggtgaaatcttacatgaacccgaaagacaaagattgattcctgagaatgct
cttagaatcttcgttcttcattttttgaaagttctcagcttagaaatgaattgcgcgttt
acttatggcatagagtttggtacatccactcttaacggtttccatatcatgcattcccaa
agatttagaaaatggaaactaccaacgccagacgggtccggggtaaccagagcgtttgta
tcctctagcagtttaacacaggacattaatcgtgctgtggtaaagttgaaatccgtctcc
tccatgtttaatacagaatgtcaagatgaggttggcgctattgattgtcgtcttctcctt
cactcagtaacagctgctgtatatctaaaattatttagtaaaggtcccggaaatcaagat
tttcaccatgatatcatccgtgttctgtttattcatggtgtaatactcacacaagtttca
ttgaagtacagatcattttctctggatgactttaaacgtgtgtttaagaatacaacggtg
gagagtcggttgaaagaaagtcttgaaaaattgcagtttatcatggcagaagttcttgac
gtatttatccaagcattaaaagatgaagactctcctcggtcgatgaaaggagtatgcgat
gcttgggatggacggttgttttatcaagttttattgttgttggtaacaagcaaggcgaat
ggaagtgatcttcaattgtccgatatttcaaaccgaaagtacgaatctctcgtcaaggtt
gcatcatctttgctagacgatgaggaaaaacttgaagcgtttcctatcatccattgtctt
gagaaacacttggctgattctacacaagtaaagaatgtagatttcaaacatggtgtgcta
gagattacaaagaaatggagaaacgtgaaggagagtaaagatggtttgatcaaaatggag
tgcttgttgttgaatgaatacgcagggaagattcttgagaatacatcagtaaggaagctc
gatataaaggatccagatgtcgcagctttagttgtgagcggaaataattttgacgagaaa
tatcattggcattccggaaggccactcactgatgagtataaaagaacagaagagagtaac
aacattaatcaagataaacatgccagatttatgcagagatatggacagtcattgcatggt
gaagtaacctacaagccaattgtcgttaaggatacaacaatcaagagtcacaagaaaacg
agcaagatttcacagaaagccctagctattcaacaagataattcccagacgatagaggaa
aaggaactaagaaaagaagagaattcgtggacgagcgagagaaaaaaagttcaacagtac
gaaaatgaaggagaacttgacatagcacttgagaaactcgatcgctttcttaaaggagta
aacaagcgtaagataaaaattgacgtacagctaacgagagcacgaatcttgtggaagatg
tggaaggattattgtcatacaaataaggaagatgatcgagatggaagtagggccgagagt
ctctttctcacggtacaagatttagttgaaaactataaagaagatctctcgaaaaaaaat
aaagatactcttggtgagtaccttgacgcgattggtttcaaaaatattgtggtgaagacg
aatttgacaacaaagaaattcgaagctaacgatgaatacagtttgagaacatcaagctcc
agattccaactgcacaaccttggcgatcagttaaagagagaatcacggactgatcgggac
aatagaattgatcattttattcccgaaacgtggcaaagaaaaatgttggatgcagttgat
aacaagcagtcagcgttgattgtcgcaccaacatcttctgggaaaacgtttgcatcgttt
tattgcattgaacaagtgttgaaagaggataatgacggtgtcgttgtttacgtctcgcct
actaaagctttggtcaatcaagtttcagcaacctgttgtgtaagatacaaaaagaaaatg
cctccaggaaaaagtgtttatggtgtgttcactcgtgattttcgtcaaaacgcccttaca
tgtcaaattctcgtcacagttccccaatgccttgagatcttacttctttcccccgccaga
caagattgggttgagaagatcagatatgttgtatttgatgaagttcattgtattggttca
gagattggggctgaggtatgggaacatctcttgctcatgattcgctgtccattcctggcc
ttatctgcgactatcaggaatccggacgatcttcacagctggttgcaaaatgctgaaaat
gataaacattatcgtgacactagaaacaacacaattcgtccaaatgcaccaaaatcctat
aaagtcgacctcataacgtacaacgaaagatataatgatctcgagaagttcaattaccta
ccaggccggtccaagccgatgattgagcatattcatccgtgttcagtaataacctctcgt
cagctgaagcattcaggtacattccccgcacacgtgagtctttcgccaagagaaactttg
gctttctacgatgctttccagagggttttcaatgaagaggattctttattgagattgact
ccagagtcccactttcaggatgaaacattcatcacaaaacaaagcgttagatcgtatgaa
aatgctttgaaagatgagtttatgagctacgtcaacaataatgataagcgagtggaaaag
gttattgatagtctgtctccaagtcgtacgatagattggtcgggttcaaaaatattaaaa
agagatgctctcgcttcccagattttcccacttgtcgaagaattgaaggaaaaagaccaa
ctacctgttatagtttttagttttgatcggaatttgtgcgaacggtttgctgagagatta
atacatcgcctacaggcgaaggaggaagagcttcgtaaaggtaaagctaaagataaagaa
aaacaagagcaaaaaaaagcaaaattggaaaaacgacagcgtgatagagaagaggaggtc
gaggtgatgcgaaagactgaatcatctgggcatgattcgtttcatcgtcaaaaaaagaca
accgctgagacggcatgtttcttatttgataatgctccaccaaaaagttgtagttatgct
gggataggtgttctagatgatcaagatgctcaggtcatcgttgagaggttggaaaaaccg
aagggcattattagtgttgatgaagtatttaaggaaggactaagacgtggaattagttac
catcacgccgggatgccaggcaaacagcgtggtgttgtcgaaatgttgtttcgaaagaaa
tttttaagagttgtgttcgctactggaacattggcactaggaattcatatgccatgtaag
acggccgtgtttgcggacgactccgtgtttcttaatactcttcagtatcatcagatctct
ggtagagcaggacggcgtggttatgatcggattggacatgtccttttcttcggcatacct
caagcaaagatccagcgtcttatgacagtcagcctgcctcgtatcattggaaattttcct
ctgaatgtgtcattggtgttgcgcttgcttcttctcgtgaataatgtgaaagaacgtgaa
attgctatgagtcaagttttagcacttcttcagaatccgctgatttgtaagaatcaacct
gaacttgatcttcagttgaaacatcactttctcttcagtgtagaattgttggtacgccag
ggactgcttgatgagaagggtcatcctcaaggtttagctggtttggccacccaccttcat
tatcacgaaccttctaatttcatcttggtcacattcttacgtgatggactttttcatgat
atatgtcgcagtgctagatcacgtgatggcacattctccaaagatttcttgaaatccctg
gtagttttgttaagtcatctatttgctcgacgtaaactacacaaaatagtattacgtcgt
aaccgcagcacatctaaagttctcctggaagacttaccagcaaagttcaaaattggtctt
cagaaatacaacaaaaaagttcgcgatgtgtttgatctgtacctgcgtacagtggctggt
catgtctacgacactttaggagaagatgtcacattaccattatcccgcactaagctgatt
tcatctgagagttacgttgttccgtcaccagcagtaacattagaagataaactaaagtct
attgctattccgtataaagcatgttctgcgttcgcagcattatctggcaactcagacacc
aagctgtatagttcccaggatcttctatctaatattcgatatcaggtctacacggatgtt
aaagttattcccactttggaggataatgtagaccttaacgcttacgcatacgatttcttt
aaccatggcaaccaaaaagcgttagtaaacgagaatggtttaatgcaaggcgatgcttat
aatctagttaaagactttatgttggttctgaagtccatttctgtctcgctaactgagttg
gctccggataaagaggatgatgacgtcatccaagcatttacacagctcgccgaagaatat
gaatcaacatttaacgaggctttcaaacgttga
DBGET
integrated database retrieval system
