Dendronephthya gigantea (soft corals): 114530375
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Entry
114530375 CDS
T06112
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03013
Nucleocytoplasmic transport
dgt03015
mRNA surveillance pathway
dgt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114530375
09122 Translation
03013 Nucleocytoplasmic transport
114530375
03015 mRNA surveillance pathway
114530375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgt03019
]
114530375
03041 Spliceosome [BR:
dgt03041
]
114530375
Enzymes [BR:
dgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114530375
Messenger RNA biogenesis [BR:
dgt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114530375
Spliceosome [BR:
dgt03041
]
Complex C
Other components
EJC/TREX
114530375
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
114530375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Thioredoxin_6
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
114530375
NCBI-ProteinID:
XP_028407797
LinkDB
All DBs
Position
Unknown
AA seq
431 aa
AA seq
DB search
MAADHEDGDVSELLDYEEDEAEAPNAGNITIKDAKKDVKGAYVSIHSSGFRDFLLKPELL
RAILDCGFEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQIEPVDGQVSVI
VLCHTRELAFQICKEYERFSKYMNNIKVGVFFGGINIKKDQQTLKANCPHIVVGTPGRIL
ALAREKSLNMKHIKHFILDECDKMLEQLDMRRDVQEIFRTTPHEKQVMMFSATLAKDIRP
ICKKFMQDPMEVYVDDETKLTLHGLQQYYVKLRDNEKNRKLFDLLDLLEFNQVIIFVKSL
VRCMALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVN
IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNDVQDRFEVNIGELPQE
IDITSYLEQAR
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagaccacgaagatggtgatgtttcggagcttttagactacgaagaagatgaa
gctgaggccccaaatgcagggaatattacaattaaagacgcgaaaaaagacgttaaggga
gcctatgtcagtatacacagttctggttttagagatttcctcttgaaacccgagctactt
cgtgccattctcgattgtggttttgagcatcctagcgaagtccaacatgaatgcatccct
caagccattcttggcatggatattgtttgtcaagcgaaaagtggtatgggaaaaacagct
gtatttgtccttgctactttgcaacagatcgaaccagttgatggccaagtcagtgttatt
gtgctgtgtcatacgcgtgagctggcctttcaaatctgcaaagaatatgaaaggttctcc
aaatacatgaataacatcaaagttggagtcttctttggtggtattaacatcaagaaagat
cagcagacactcaaggctaactgtcctcatattgtcgttggtacgcctggtcggatcctt
gccttagctcgagaaaaatcactcaacatgaaacacatcaagcatttcattcttgacgaa
tgtgacaagatgcttgaacaacttgacatgcgtcgagatgttcaagagatcttccgaaca
acaccacacgagaagcaagtgatgatgttcagtgccacacttgctaaagatatccgacca
atctgcaagaagtttatgcaagatccaatggaagtatatgttgatgacgagacgaaactg
acccttcatggtctacagcaatactatgtgaaactgcgtgacaatgaaaagaatcgtaaa
ctgttcgatcttctggatcttctcgaatttaaccaggtgataatttttgtgaagagcttg
gttagatgtatggctttagcgcaattgttggttgaacagaactttcctgcaattgccatt
cacagaggaatgccacaagaagaaagattgtccaggtaccaacagtttaaagattttcag
aagcgcattttggtggcgactaatctgtttggtcgaggcatggatatcgaacgtgtaaat
atcgttttcaactatgacatgcctgaagactccgacacgtacttacacagggtcgctcgt
gctggaagatttggaaccaagggtcttgcaattacattcgtctcagatgaaactgatgct
aaagttttgaacgatgttcaggatagatttgaagtgaacatcggcgagttgccacaagaa
atcgatattacatcctacttggaacaagcacgatga
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