Dendronephthya gigantea (soft corals): 114535658
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Entry
114535658 CDS
T06112
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114535658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dgt03041
]
114535658
Enzymes [BR:
dgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114535658
Spliceosome [BR:
dgt03041
]
Complex C
Other components
Step II factors
114535658
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
RRM_1
OB_NTP_bind
IBR
DEAD
zf-C3HC4_2
zf-RING_UBOX
HA2_C
zf-C3HC4
ResIII
RRM_3
AAA_22
zf-RING_2
Helicase_RecD
HA2_N
AAA_19
zf-RING_5
KH_1
nSTAND3
ABC_tran
Flavi_DEAD
AAA_30
T2SSE
AAA_16
RsgA_GTPase
ATPase
Motif
Other DBs
NCBI-GeneID:
114535658
NCBI-ProteinID:
XP_028412748
LinkDB
All DBs
Position
Unknown
AA seq
2444 aa
AA seq
DB search
MGGNQSNSQKAETFQPEENKENHRHRVGQADKFEPINENFCFRYGTETEFWLLLELFEKQ
SIIPADELYKWLAEQLGDSTSMIVGVQYLDEQFTNAPKQFLVYCRNCETLQFAFECLSSE
ELSRRSICKISSSHPCHQPETELLTDVYSLLSTSTSHSVAVKERFNVSDQSKYVLSQPGE
EPCDKSMMLEHYHQTSLGENQDQVIPNDKYKNAECTSLKSKEGSSVMIASSDASSDDVIG
AGYSNHKKLPGKKNVTDFNPPMVNTPVDRSGNWNGSWNEDFADRIYTENVECNKETSLFT
NNPSLNEKGRKRDCVSSLKTNSAVVANNAPPSTKCFSVNDLNSDKLISKRNYTLDNVTEK
TNIKMQRKKTQTSCSRSRQGMMQHPPLQTSSFRPGMMQQMPLQTSLSRPGMMQQMPLQTG
SSRPGMMQHPPLQTGSSRPGMMQHPPLQTGFSRPGMMRHRPLQTGSSRPGIMQHPPLQTG
SSRPGMMHHMPLQTGSSRPGMMHHMPLQTGSSRPGMMHHMPLQTGSSRPGMMHHMPLQTG
SSRPGMMHHMPLQTSSSRPGMMQQMPLQHTYSQEQVQASDFFRKPKCDNEFKQSDLSNKV
PSERKKRSEEAKPSKFSEEYVLSCNPLQAEIIGDNKFSKVQCHLQDNERYLENQKLPEKE
KDWEENVKRILQQQLSQKHHQQPPNQQQQQYLSGQQPEYSSDQPQQHQKLKMPSNNHIVQ
FDGFPRDCNEENILRFINEQCDSVEILKVVQIEKECFVKLNSQSDCQKLHEAMRKSSYNG
VKIKPFWKRLPKETNQDRPYVVVNNLDQKFKQKDVQNVFKNCQGFVDVTRQVKDSYARVY
FDSVDSAGKAIDQRNKLCLGGKSLEVTAAIGITEELEWRKLECQRVEYLKKLHERKEALL
KQNDKKLKDLEDRTPDLSRREKYMPLEEFDRLKEARKTYKGKKQELEEQKNEFENKYCQL
LESFNKQIEDYHSVNYRKGIEDVLKTHKNITEREFRKFEASLPIYAKRTEILKRINCGQV
VVLVGETGSGKSTQLAQYLAEENLNERKKVVVTQPRKIAAISLAKRVSEEFGCEIGEEVG
YHVGLDKKIKNKTIIKFVTDRILLNEVLKGDDVVKQYSYIVIDEAHERSIHTDLLVAMLK
KQLAKFPLLKLIVTSATLNTDIFRQYFGNCPLVTVPGRTFPVERVYMKERPTDYVGGVYE
KIVEVCQSKEQGDILVFLTQQNEIEKTCDKLEQRLGTGNIILPLHGKLQSDEQQKVFETT
PKGKRKIVVATNSAETSLTIDGIRIVVDSGMVKEPSFDPARNMTTLEVKLVSQSSAVQRS
GRAGRTEPGKCYCLYTYEDYENMAKNTKPEILKMHLGMAVLQLLSLGVTDIQQFDFVQSP
PADALTKAIESLKMLRALDPDGTLNDLGKEMLLLPTEPQLSKALLEGLDRGCGNEIIIAA
ALMSSGHDVFYRGNLEIRNECAIQKQEFCQTSGDLLSAIDVYKKWSEKSKKEQVAWCKEN
ALNSKLLRAARETFREIREALSHLRDRGINLDVTAENIQESLIKSLLTGYFENIAWSFGH
DRLGYMVVSSNHTNQKARIHPSSVLASLGYQPDWVLYQQLKSSNDQVFLLNITPVHYEWL
AEVAMHMLQYIDEDAIDKSRVIRQRFHPVGPEMVKAVIGFQGSTLKQIEASVTEKYSVFC
AVECSVDKGMVDVYTSKDSLHYASQLVNDVIQRRRHELDGYSEVVISNVGGLKMLVSNNL
QTKLILQPRTSCKFEVFVDTIDPSEKVESMTVLEMLKDAGKILHFATTTKPGSEGNFKWG
NVTYISTDEAEKARKFLNFVDPLDLPYNVQKIKLSPIRVERATSQDNTQPSGIKVLVSWF
PLPASGRAYIKCKSREVTDMIVQNLDCVLAPVESLKPKIFVKKDSGDICIHVRETADEFT
VRKQLESCCTISQIENISKISVPSKQSKIDPEEEKEKLIEVLKDFGPVRILKPWIANSQK
VLAYAIFEDLNSAEKTVLELNERNGVIGARAMYLEFAKKVEVMCDGRIFEKIRKEIEALK
KDDVTISNEQCQRRRKIIVTGDDPKVVQDIGVTISSLVAPEIVLIEDAETAEILSSGYGR
SKIKQIQKQTNAIIYTNNFGRRIQITANSKSKRQARVQIEKLIKDLRKTRHSEIDLRHSD
RPVGAIREILKHFGKDLNKLVEGEDCQASMEIRRRKLVLHGSKEAVNKVQNKVEEFLQTL
PNSQRETANLVNECPVCFGEVEDPYLLTLCGHAYCFACITQYLNNVFDSVKSADMFPQKC
MCEKCEYYAIKEDYSKLLDVDQIEKLYRISLECFMIGNPNIKPCPTPDCSWIYEITADPN
VFTCPECNTQTCKKCGDSGHEKFDTCEAFKASKGISRSDQQLKEWAKGANTRECPKCSVM
IEKNSGCEHMHCTQCKAHICWQCGKFFSTSEQCYEHIPFCDSLK
NT seq
7335 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcaaccaaagtaattcgcaaaaagctgaaacatttcaaccggaggaaaacaag
gaaaatcacagacatagagttggccaagccgacaaatttgaacctattaacgaaaacttt
tgctttcgctatggcacagaaacagaattttggttgttgttggaactattcgagaaacaa
tcaattataccagcagatgagctttacaaatggctagcagaacaattaggggattcgaca
tcaatgattgtaggtgttcaatatttagatgaacaatttacaaatgcacctaaacaattt
ctagtttattgtagaaactgtgagaccctgcagttcgcttttgaatgtttgtcaagcgag
gaattgagtcgtcgttctatttgtaaaatttcatcatcccatccgtgtcatcaacctgaa
accgaactattgaccgacgtctacagtcttttatctacaagtacaagtcattcagttgct
gttaaagaaagattcaatgtttccgaccaaagtaaatatgtgttgtcccagcctggtgag
gaaccatgtgataaatccatgatgctcgaacattatcatcaaacctccctgggagaaaac
caagaccaagtgattccaaatgacaagtacaaaaatgcagaatgtacatcgctgaaaagt
aaagaaggttccagtgtcatgattgcttcaagtgatgcgtcaagtgatgacgtcataggt
gcagggtacagtaatcataagaaattaccaggaaagaaaaatgtgacagattttaatcca
ccaatggttaacacgcctgttgatcgaagtggtaattggaatggtagttggaatgaggac
tttgctgacagaatttacacagaaaatgttgaatgtaataaagaaacatctctcttcact
aacaatccttcgttaaatgaaaaaggtcgaaaaagagattgtgtatcaagtttaaagaca
aattcagcagtggttgcgaacaatgcgccaccatcgacgaaatgtttttctgtcaatgac
ttgaattctgataaattaatatccaagagaaattacacgcttgataatgtcactgaaaaa
acaaatataaagatgcaacgtaaaaagacgcaaaccagttgttctcgctctcgacaagga
atgatgcaacatccgccgttacaaaccagttcttttcgaccaggaatgatgcaacaaatg
ccgctacaaaccagtttatctcgcccaggaatgatgcaacaaatgccgctacaaaccggt
tcttctcgaccaggaatgatgcaacacccgccgctacaaaccggttcttctcgaccagga
atgatgcaacacccgccgctacaaaccggtttttctcgaccaggaatgatgcgacaccgg
ccgctacaaaccggttcttctcgaccaggaataatgcaacatccgccgctacaaaccggt
tcttctcgaccaggaatgatgcaccatatgccgctacaaaccggttcatctcgaccagga
atgatgcaccatatgccgctacaaaccggttcttctcgaccaggaatgatgcaccatatg
ccgctacaaaccggttcatctcgaccaggaatgatgcaccatatgccgctacaaaccggt
tcttctcgaccaggaatgatgcaccatatgccgctacaaaccagttcatctcgaccagga
atgatgcaacaaatgccgctacaacacacttattcgcaggagcaagtgcaagccagtgat
ttttttcgtaagccaaaatgtgataacgagtttaaacaatcagatttgtctaataaagtg
ccttcagagaggaaaaaacgtagcgaagaagcaaaaccttcaaaattttcagaagaatat
gttcttagttgtaatccattacaagcagagattataggagacaataaattttcgaaagtg
caatgtcacctgcaggataatgaaagatatttggaaaaccagaagttgccagaaaaagag
aaagattgggaagaaaatgtaaaaagaatacttcagcaacaactaagtcaaaaacatcat
caacagcctcctaaccaacaacagcaacaatatttatctggccagcaaccagaatattca
tcagaccaaccacagcaacaccagaagctaaagatgccaagcaacaatcatattgtccaa
tttgatggattccctcgcgattgcaatgaagaaaacattctcagatttattaatgaacag
tgcgacagtgtggaaattttaaaagttgttcaaatagaaaaggagtgctttgttaagtta
aattcacaaagcgattgccaaaaattacacgaagctatgcgaaaatcgtcatataacggt
gtaaaaataaaaccattttggaaaagactaccaaaagaaacaaaccaagacaggccatat
gttgtggtaaataatttagatcaaaagttcaagcaaaaagacgtacaaaatgtttttaaa
aactgtcaaggttttgttgatgtaacaagacaagtgaaagacagttacgcacgcgtatat
ttcgattccgttgattccgcaggaaaagcaattgatcaaaggaacaaattgtgccttgga
ggaaagagtctcgaagtgacagcagcgattggaattacagaagaactggaatggagaaaa
ttagaatgtcagcgtgttgaatatttgaagaaattgcatgagcgaaaagaagctcttctc
aaacaaaatgataaaaaactgaaagatcttgaagatcgcaccccagatttgagtcgtcga
gaaaaatatatgccattagaagagtttgatcgtctgaaagaagcaagaaaaacatacaaa
ggaaagaaacaagagttggaagaacaaaaaaatgaatttgagaataaatattgccaactt
ttagaaagcttcaacaagcaaattgaagattaccacagcgttaactatagaaaaggaatc
gaggatgttttaaaaactcataaaaacataacagaaagagaatttagaaagtttgaagcg
agtttaccaatatatgccaagcgtacagaaatactgaaacgcatcaattgtggtcaagtt
gtggttcttgttggtgagactgggtcagggaaaagtactcaactggcgcaatatctagca
gaagaaaatttaaatgaacgaaaaaaagttgtagtaacccaacctcgtaagatagcagca
ataagtttagcaaaaagagtgtctgaagagtttggatgcgagattggagaagaagtagga
tatcatgttggtttggataagaagataaaaaacaagacaattatcaagtttgtaactgac
cgtattttattgaatgaagttttaaaaggagacgatgttgtgaaacaatattcatatatt
gtgatcgatgaagcacacgaaagatctattcacacagatttacttgtagccatgcttaag
aaacaacttgctaagtttcctcttctcaaactgatcgtgacctctgcgacgttaaatact
gatattttccggcaatattttggtaactgccccctggtgacagtacccgggagaacattt
cctgtagagcgtgtttacatgaaggaaaggccaacagactatgttggtggtgtttatgag
aagattgttgaagtgtgtcaaagtaaagaacagggagatattttggtattcttgacacag
cagaatgaaattgagaagacttgtgataagttggaacagagattaggaacaggaaacatc
atccttcctcttcatggcaaattacaatcagatgaacaacagaaggtttttgagacaacg
cccaaaggaaagagaaaaattgtcgtggcaacaaacagcgcagaaacttcactgactatt
gatggtattcgtatcgttgttgattcaggcatggtgaaagaaccatcttttgatcctgct
agaaatatgaccactttagaggttaaacttgtgagccaaagttcagctgtacagcggtcc
ggtagggcaggacgtacagagccaggcaagtgttattgtttgtacacatacgaagattac
gagaatatggcgaaaaatacaaaacctgagatcttaaaaatgcatcttggaatggctgtt
cttcagctgttaagtttaggagtcacagacatccaacaatttgattttgtccaaagtcca
ccagctgatgcgctgacgaaagcaattgagagtttgaaaatgctgagggctttagacccg
gacggaactttgaatgacttgggaaaagaaatgcttcttttaccgactgaaccacagctt
tcaaaagcgcttcttgagggacttgatcgaggatgtggaaatgaaatcatcattgctgcg
gcacttatgtcgagcggtcatgacgttttctatcgaggaaaccttgagatcagaaacgaa
tgtgccattcaaaaacaagaattctgtcagaccagtggtgacctgctgagtgcaattgac
gtgtacaaaaaatggtcagagaaatccaagaaagagcaagttgcctggtgcaaggagaat
gctttgaattccaaattacttcgcgctgctcgagagacgtttcgggagatcagagaagcg
ttgtctcatctgcgagatcgcggcatcaacttggacgtgacagcagagaatattcaggaa
tctttgattaaaagtttattaactggatatttcgagaatatagcttggtcatttggtcat
gatagacttggttatatggtggtatcgtcaaatcacaccaatcagaaggcaagaattcat
ccatcatctgttctcgccagtcttggttatcaacctgattgggtactataccagcaactc
aagagctcaaatgatcaagtctttttactcaatatcacaccagtacattatgaatggttg
gcagaagttgctatgcatatgttacagtatattgatgaagacgccattgataaatcaaga
gttatacgacaaagattccacccagttggtccagagatggtcaaagctgtaattggtttt
caaggttctactctgaaacagatagaagcatctgtaaccgaaaagtattctgtattttgc
gcagtcgaatgtagcgtggataaaggaatggtcgatgtatatacctcaaaggattctctt
cattacgccagtcaacttgtgaacgatgtgatccagagaagacgacatgaacttgatggt
tactcagaggttgtcatttcaaatgtagggggccttaaaatgttagtttcaaacaatttg
caaacgaagttaatccttcaacccagaacctcatgcaaatttgaagtttttgttgacaca
atcgacccgagtgaaaaggttgaatcaatgactgtgcttgagatgctcaaagacgccggg
aaaattctccactttgccacgacaaccaagcctgggagtgaaggaaatttcaagtggggt
aatgttacctacatttctactgacgaagccgagaaggcaagaaaatttctgaattttgtg
gatccacttgatttaccttacaatgtccaaaaaataaagctcagtcccatacgcgttgaa
agagcaacttcccaggataatacgcagccctctggaatcaaagttttagttagctggttt
ccacttcctgcaagtggacgagcttacatcaagtgtaagagtagagaggtaactgacatg
atagtccagaacctcgattgtgtattagcacccgttgaatcactcaaacccaaaatattc
gtcaaaaaggattcaggtgatatttgtatacatgtacgcgagacggccgacgaatttaca
gtaagaaaacaactcgaaagttgttgtacaatatcacaaattgaaaacatttcaaaaatt
agtgttccgtcgaaacagtctaagattgatcctgaagaagagaaagaaaaactgatagaa
gttttaaaggattttggacctgtgcgaattttgaaaccttggattgcaaatagtcagaag
gttctggcgtatgcgatatttgaggacttaaacagcgctgaaaaaactgtactagagttg
aatgaaagaaatggcgttattggagcaagagcaatgtacctggaatttgcgaaaaaagta
gaagtcatgtgtgatggaagaatatttgaaaaaataaggaaagaaatcgaagcactaaag
aaagatgatgtcaccatcagtaatgagcaatgtcagagacgtagaaagatcatcgtcact
ggagacgatcctaaggtggtgcaagatatcggagttaccatatcaagtttagttgccccg
gagatcgttttgatagaagatgcagaaacagccgagattttgtcaagtggatatggccgt
tcaaaaatcaaacagatccaaaaacagaccaatgcaataatctataccaacaactttggt
cgccgtattcaaataaccgccaattcaaaatcaaaacgccaagctcgggtacagattgag
aaattgatcaaagatctgcgaaaaaccagacattcagagattgatctacgacattcagat
cgacctgttggcgcaatccgagagattctgaaacactttggaaaagatcttaacaaactc
gttgaaggggaagattgccaagcttcaatggagatcagacgtcgaaaacttgttttacat
ggttccaaagaagctgttaataaagttcaaaataaagtagaagaatttcttcaaacatta
cccaactcacagagggaaacagcaaacttagttaatgaatgtccagtttgttttggtgaa
gttgaagatccgtatcttcttacattatgtggtcatgcctattgttttgcttgcatcaca
cagtaccttaacaatgtttttgattcagtaaagagtgcggacatgtttccacagaaatgt
atgtgtgagaagtgcgagtattatgcaatcaaagaagattactcaaagctgttagatgtg
gatcaaattgaaaagctctaccgtatttcgttggaatgtttcatgattggtaaccccaac
atcaagccctgccccacacctgattgttcctggatatatgaaatcactgcagacccgaac
gtttttacatgtccggagtgtaatacccaaacgtgtaaaaaatgcggagattcaggtcat
gaaaaatttgatacgtgtgaagcatttaaagccagtaaaggaatatcaagatcagatcaa
cagttgaaggagtgggcgaagggcgctaatactcgcgaatgtccgaaatgttcagtaatg
atagaaaaaaattccggatgtgagcacatgcattgtacccagtgtaaggctcacatatgt
tggcagtgtggaaagttcttttcaactagtgaacaatgctatgaacatattcccttttgc
gacagtcttaaatga
DBGET
integrated database retrieval system
