Dendronephthya gigantea (soft corals): 114535863
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Entry
114535863 CDS
T06112
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114535863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgt03019
]
114535863
03041 Spliceosome [BR:
dgt03041
]
114535863
03009 Ribosome biogenesis [BR:
dgt03009
]
114535863
03016 Transfer RNA biogenesis [BR:
dgt03016
]
114535863
Enzymes [BR:
dgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114535863
Messenger RNA biogenesis [BR:
dgt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114535863
Spliceosome [BR:
dgt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114535863
Complex C
U4/U6.U5 tri-SnRNP related factors
114535863
Ribosome biogenesis [BR:
dgt03009
]
Eukaryotic type
Pre-60S particles
Helicases
114535863
Transfer RNA biogenesis [BR:
dgt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114535863
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DBC1
AAA_22
Motif
Other DBs
NCBI-GeneID:
114535863
NCBI-ProteinID:
XP_028412982
LinkDB
All DBs
Position
Unknown
AA seq
1030 aa
AA seq
DB search
MADFGGDDLFAVFDHVESKKDEKASDISEGNVKDSVKRIFQQRGEKRGLDDSTDGIQRSE
IEIDGGDDKLKKVKKTDDESSILESVPVVEIISVDTFEACTHEVAVPEGVTYTELQVPTT
KPAKEYPFILDPFQKEALSCIENTQSVLVSAHTSAGKTVVAEYAIALSLRNKQRVIYTTP
IKALSNQKYRELYEEFQDVGLMTGDVTINPSASALVMTTEILRSMLYRGSEVMREVAWVV
FDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNASQFAGWIAHLHKQPCHVVYTE
FRPTPLQHYIYPAGGDGLFLVVDESGNFREDNFQKSMAVIQDGPGSGQQKGRKGGTKGPS
NTFKIVKMIMERKFQPVIVFSFSKKECEAYALQMSKLDFNTGEEKKLVEEVFNNAIDCLS
DDDKKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFALGLNMP
ARTVVFTNPRKFDGKDFRWITSGEYIQMSGRAGRRGLDDRGIVILIIDEKMGADVGKGLL
KGSADPLNSAFRLTYNMVLNLLRVEEVNPEIMLERSFYQYQNYAAIPEMVKRLKDLETKR
DAVVIPNEESISSFYKIRQQLKKLGNDMLGFIHQPKYCLPFMQPGRLVHVKHEDMDFDWG
VVINFQKKANQKSETMSEESLYVLEVLVNCSLKPKKTATGSIPNPCPPGEKGEMQVIPVL
LQLVQAVSSVRLYIPKDIRPLDARQNVGKSIQEVKKRFKDGLPLLDPIDDMGIKDEGLKS
IVRKIEALEHKMYTHPMEKDPDRDSLYELCETKSKFNNDIKLAKKEIKKCRTILQMDELK
CRKRVLRRLGYSTAADVIELKGRVACEISSADELVLTEMIFNGVFNDLTVEQCPALLSCF
VFQEKSGEMPKMTEELAGPLRQLQETARRIGKVSQEAKLNVDIEDYVGSFKPQLMDVVYS
WSKGAAFSQICKMTDVFEGSVIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKR
DIVFAASLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggctgattttggaggtgatgatttgtttgctgttttcgatcatgttgagagcaagaaa
gatgaaaaagcctcggatatttcagaaggtaatgttaaagactcagttaaacgtattttc
caacaacgaggtgaaaaacgaggcctcgatgacagcactgatggtatacaacgtagtgag
attgagatcgatggtggtgacgataaattgaagaaagttaagaaaacagacgatgaaagt
tctattttggaatctgttcctgttgttgaaattatttcagtggatacatttgaagcttgt
actcatgaggtggcagttcctgaaggtgttacatacactgagctacaggttcctacaact
aaaccagcaaaggaatatccattcattttggatcccttccaaaaggaggctttgagctgc
atagaaaatactcagtctgtgttggtttcagctcatacctcagcaggaaaaactgtcgtt
gcagaatatgcaatagctttatctctaagaaacaaacaacgtgtgatttatacaactcca
ataaaggctctcagtaatcagaaatatcgtgaactttatgaagagttccaggatgttggt
ctaatgactggtgacgtcaccattaatcccagtgcaagtgctctggttatgacaactgag
atcttaagaagcatgttgtaccgtggctcagaggtgatgagagaagtggcttgggttgtt
tttgatgagattcattacatgagagacaaagagcgtggtgttgtatgggaggagacaatt
atcttattgcctgacaatgttcactacgtttttttatctgcaactattccaaatgctagt
cagtttgcaggatggatagcccatcttcataaacagccatgtcacgtggtgtatacagag
tttcgcccaaccccattacaacattatatttacccagctggaggagatggtttgtttttg
gttgttgatgaaagtggaaatttcagggaggataacttccagaaatctatggctgtgatt
caagatgggcctgggtcgggacaacaaaaaggaagaaaaggaggaacaaaaggaccttca
aacacgtttaaaatcgtgaagatgatcatggaaagaaaatttcaacctgttatcgtattc
agtttcagtaagaaagaatgtgaggcgtatgcattacagatgtccaagttagacttcaat
acaggggaagagaagaaactcgtggaggaggtttttaataatgccattgattgtttgtca
gatgacgacaagaaattaccccaggtggagcatgtcttgcccttattaaaacgaggcatt
ggcattcatcactcgggattgcttcctattttgaaagagacaattgaaattcttttttcc
gaaggtttaataaaggctctgtttgcaacagagacattcgctcttggcctaaacatgccc
gccagaacagttgtgtttacaaatccacggaaatttgacggcaaagatttcagatggata
acatcaggtgaatatattcaaatgtcaggacgggcaggtagacgaggtttggatgatcgc
ggtattgtaattttgatcattgatgaaaaaatgggagctgatgttggaaagggattacta
aaaggaagtgctgatccattgaacagcgcattccgtcttacttacaacatggtgttgaac
ttgttacgagtggaggaagttaatcctgaaattatgttagaacgatcattttatcaatac
caaaactacgctgctattcctgagatggttaaacggttgaaagatctggaaaccaaacga
gacgctgtcgtgattccaaatgaagaatccatctcttcgttttacaaaataagacaacaa
ttgaaaaaacttggaaatgatatgttgggtttcattcatcaaccgaaatattgtctacca
tttatgcaacctggacgtctggttcatgtcaagcacgaagatatggattttgactggggt
gttgtcataaattttcaaaagaaagcaaatcaaaagagtgaaacaatgtctgaagaatca
ttgtacgtattggaggttttagtaaactgttctttaaaacctaagaagactgcaactgga
agtattcctaatccatgccctcctggcgagaaaggagagatgcaggtgatcccagttctt
cttcagttagttcaagctgtgagcagcgtgagactttatattcctaaagatatcagacca
cttgatgcaagacaaaatgttggaaaatcaatacaggaggtaaaaaagagatttaaagat
ggtttaccactattggatccaattgatgatatgggaattaaagacgagggtttaaagtca
attgttaggaaaatcgaggcacttgaacacaagatgtacacacatcccatggagaaagat
cccgatcgtgactcactttatgagctttgtgaaacgaaatctaaattcaataacgatata
aaactagcgaagaaagaaattaaaaaatgtcgaaccatattacaaatggatgaactgaag
tgtagaaaaagagttttgcgaagactgggctactccacagcagctgatgttattgaactc
aaggggagagtagcctgtgaaataagcagcgccgatgaacttgtgttgacggagatgatt
tttaatggagtttttaacgatctgactgttgaacaatgtccggcattgttaagttgtttt
gtttttcaagaaaagagcggggagatgccaaaaatgacagaagaattagctgggccatta
cgacagctacaagaaacagctcgacgtattgggaaagtttctcaagaagccaaacttaat
gttgatattgaagattatgttggctcttttaaaccacagttaatggacgttgtttattct
tggagcaaaggggctgcattctcccaaatctgtaaaatgactgacgtatttgaaggtagt
gtcatcagatgcatgcgtcgtttggaagaactccttagacagatgtgtcaagctgctaaa
gctattggaaacactgagctcgaaaataaatttgctgaaggaattacaaagatcaaaaga
gatatcgtatttgctgccagcctttacctgtaa
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