Debaryomyces hansenii: DEHA2C13068g
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Entry
DEHA2C13068g CDS
T01026
Name
(RefSeq) DEHA2C13068p
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dha
Debaryomyces hansenii
Pathway
dha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DEHA2C13068g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dha03019
]
DEHA2C13068g
03041 Spliceosome [BR:
dha03041
]
DEHA2C13068g
03009 Ribosome biogenesis [BR:
dha03009
]
DEHA2C13068g
03016 Transfer RNA biogenesis [BR:
dha03016
]
DEHA2C13068g
Enzymes [BR:
dha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DEHA2C13068g
Messenger RNA biogenesis [BR:
dha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
DEHA2C13068g
Spliceosome [BR:
dha03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
DEHA2C13068g
Complex C
U4/U6.U5 tri-SnRNP related factors
DEHA2C13068g
Ribosome biogenesis [BR:
dha03009
]
Eukaryotic type
Pre-60S particles
Helicases
DEHA2C13068g
Transfer RNA biogenesis [BR:
dha03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
DEHA2C13068g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Death_3
AAA_22
DUF4476
Motif
Other DBs
NCBI-GeneID:
2900079
NCBI-ProteinID:
XP_458244
UniProt:
Q6BU75
LinkDB
All DBs
Position
C:complement(1144373..1147561)
Genome browser
AA seq
1062 aa
AA seq
DB search
MDGEDLFDVFDEAPANAPPVIQTEPNSKKETSKKRQASEEPKENGEEKQAKKEKKTDTKK
DEKTKAKQDITPVVFDAVEIEASREVAVSDGLMGKTSDAKPGQLQLRHQVRHQVAIPPEY
PYVPIGEHKRQNEARTYPFVLDPFQDTAISCIDRSESVLVSAHTSAGKTVVAEYAIAQSL
REKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPDAGCLVMTTEILRSMLYRG
SEVMREVAWVIFDEVHYMRDKARGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKI
HAQPCHVVYTDFRPTPLQHYLFPAAGDGIHLVVDEKGTFREENFQKAMASISDNVGDDPS
SADKSKGKKGQTYKGGNKDGKSDIYKIVKMIYMKRYNPVIVFSFSKRDCESLALKMSKLD
FNTDDEREALTKIFNNAIELLPDADKELPQIKNILPLLRRGIGIHHSGLLPILKEIIEIL
FQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVSGGEYIQMSGRAGRRGLD
DRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLESSFY
QFQNAASVPVLEKNLQELTLKSNSIQIDDEATVREYYDLKKQFDIYQDDVRQVVTHPGHI
LPFLQAGRVIKVKVGDMDYGWGMVTSFTKRTNKRNPSQTYSDHEAYIVNVFVYTMFVDSP
VNLIKSFNPDLPIGIRPANAGEKSRAEYIPITLDSIEKISSVRLRVPDEFKSSSAKKNLL
KTMKDLPKRLPDGIPLMDPIESMKIDDNDFKLLLRKIDVLESKMLSNPLHESVRLKDLYE
KYSEKVEIENKIKSLKDKILEAQAVIQLDDLRHRKRVLRRLGFTTQNDIIELKGRVACEI
STGDELLLTELIFNGTFNDLTCEQCASLLSCFVFQEKAKEVPRLKPELAEPLKSMQDMAS
KIAKVFKECKIELVEKEYVESFRPELMEVTYAWCKGASFTQICKMTDVYEGSLIRMFKRL
EEMLRQMVTAAKTIGNAELEEKMEKSMGLVHRDIVSAGSLYL
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggatggtgaagatttgtttgacgtctttgacgaagcaccagccaatgctccacctgtg
atacagacggaaccaaactcaaagaaggaaacttcgaaaaagcgtcaagcttccgaagag
cctaaagagaatggcgaagaaaaacaggctaagaaagaaaagaaaactgacacgaaaaag
gatgaaaaaactaaagctaagcaagatatcactcctgttgttttcgatgctgtcgaaatt
gaggcttcaagagaagttgctgtatcagatggattaatgggaaaaacatcagatgcaaag
ccaggacaattacagttgagacatcaagttagacatcaagttgctattccacctgaatat
ccatatgttcccattggtgagcataaaagacaaaacgaagcaagaacttatccgttcgtt
ttggatcctttccaagatacagccatttcgtgtattgatagaagcgaatcagtattggtc
tcagcgcatacctctgccggtaaaacagtagttgcagaatacgctatcgcccaatcatta
agagaaaaacaaagagtcatttatacctctccaattaaggcattaagtaaccagaagtac
agagaactattggcagaatttggtgacgtaggtttaatgactggtgatgttactattaat
cctgatgctggttgtttagttatgactactgaaattttacgtagtatgttgtatagaggt
tccgaagttatgagagaagttgcgtgggtgatctttgatgaagttcattatatgagagat
aaggctcgtggtgttgtttgggaagaaacaattatcttattgccagataaggttcattat
gtttttctttcggccactatcccaaatgccatggaatttgcagaatggattgtcaaaatt
catgcacaaccatgtcatgttgtttatacagatttccgtccaaccccattgcaacattat
ttgttccctgcggcaggagatggtatccatttggttgttgatgaaaaaggaactttcaga
gaagaaaatttccaaaaagctatggcgtccattagtgacaatgttggcgatgatccatca
tcggctgataaatctaaaggtaaaaagggacaaacatataaagggggtaacaaggatggt
aagtcagatatttacaagattgttaaaatgatctatatgaaaagatataacccagttatt
gttttctctttctctaagagagattgtgaatctttggctttgaaaatgtcaaaattagat
ttcaatacagatgacgaaagagaagcgttaacaaaaatcttcaataatgcaattgaattg
ttacctgatgctgataaagagcttccccaaatcaagaatattttgcctttattaagacgt
ggtattggtattcatcattctgggttattaccaatcttaaaagaaattattgaaattttg
ttccaggaagggcttttaaaggttttatttgctaccgaaactttctccattggtcttaat
atgcctgctaaaacagttgttttcacatctgtccgtaagtgggatggtaaaggtttccgt
tgggtttctggaggtgaatacattcagatgtccggtagagcaggtcgtcgtggtctagat
gatcgtggtattgttattatgatgattgatgaaaaaatggagccacaagttgcaaaagga
atggtaaaaggtcaagcagatagattggattcagccttccatttaggatataatatgatt
ttgaatttgatgagggttgaaggtatttctccagaattcatgttggaaagctcattttat
caatttcaaaacgcagcatctgttcctgtattagagaagaacttacaggaattaactttg
aaatcgaacagtattcaaattgatgatgaggcaacagtcagggaatattatgatttgaaa
aagcagtttgatatatatcaggatgatgttcgccaagtcgttactcacccgggtcacatt
ttacctttcttacaagcaggaagagttataaaggttaaggttggcgacatggattatggt
tggggtatggtcacatctttcacaaaaagaactaacaagagaaacccatcccaaacgtac
agcgatcacgaagcatatattgtgaacgtttttgtttacacgatgtttgttgattctcca
gtcaatttaattaagtcatttaatccagatcttccaatcggtattagaccagctaacgct
ggtgaaaaatctagagcagaatacattccaataactttggattcaattgaaaagattagt
agtgttagattaagagttccggacgaattcaaaagttcaagcgctaaaaagaatttattg
aagactatgaaggatttaccaaagagacttccagatggtattccattaatggatccaatt
gaaagtatgaaaatcgatgataatgactttaaattattgttaagaaagatcgatgtcttg
gaatcgaagatgttaagtaaccctcttcatgagtctgtgagattgaaagatttatatgag
aaatatagtgaaaaggtggagattgaaaataaaatcaagtctcttaaagataaaatattg
gaggctcaagcagttattcaattggacgatttgaggcatagaaagagagtccttagaaga
ttgggattcactacacaaaatgatatcattgaattaaaaggtagagttgcttgtgaaatc
agtactggggatgaattattattgaccgaattgatattcaatggtacatttaatgactta
acttgcgaacaatgtgcatcgttattatcatgctttgtcttccaagaaaaggctaaggaa
gttcctagattgaagcctgaattggctgagccattgaagtcaatgcaagatatggctagt
aaaatagccaaagtcttcaaagaatgtaagatagaactcgttgaaaaggaatacgttgaa
tcattcagaccagaattaatggaagttacatatgcttggtgtaagggtgcatcttttaca
caaatttgtaagatgactgatgtctatgaaggttctttaattagaatgtttaagagattg
gaagaaatgttgagacaaatggtaactgcagctaaaaccattggtaacgccgaattagaa
gaaaagatggaaaaatcaatgggattagttcacagagatattgtttcagctggttcatta
tatctttag
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integrated database retrieval system
