Debaryomyces hansenii: DEHA2E08954g
Help
Entry
DEHA2E08954g CDS
T01026
Name
(RefSeq) DEHA2E08954p
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dha
Debaryomyces hansenii
Pathway
dha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DEHA2E08954g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dha03019
]
DEHA2E08954g
03041 Spliceosome [BR:
dha03041
]
DEHA2E08954g
Messenger RNA biogenesis [BR:
dha03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
DEHA2E08954g
Spliceosome [BR:
dha03041
]
Complex B
Other components
Prp19-related factors
DEHA2E08954g
Complex C
DEHA2E08954g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
HAT_PRP39_C
ARM_TT21
NRDE-2
Rrn6_HB
Motif
Other DBs
NCBI-GeneID:
2902957
NCBI-ProteinID:
XP_459697
UniProt:
Q6BQ23
LinkDB
All DBs
Position
E:702559..705111
Genome browser
AA seq
850 aa
AA seq
DB search
MSGSVWDIEGLLCEDDIPYEQEVAKNPNNLSNWLRYYRFKSSTSSCTFQNRVFILERAVK
QLPRSYKLWMIYIDVVLQEVQTSVSYKSKSEILSVNMVFERSLQLLNRAPILWIKYLEFL
VETQPYEITLLRRKFNECLYNLPISQHHLIWPLYIRFADDVGGMTGVKVYLKYLQYANPE
SLQGLNNEQEGELGITIDDIISKLVEFGDVKEASKLFQHILQHTDKFIGLSKSPLQLWIE
YIDLLVNSVSKNKRSTVNYNEFDYFFEKLIKDGLQKFPDQIGKFYLKLTFYFIKRKNLFK
ARYYFDEGLKTCVSVKDFTMIFDSYTEFEENILTNMSEKLEKLGEDSDLNNELDLRMNVF
EKLINDRPYLLNDMMLRQDVNNLDEWFKKIVLYKKDSDINMMLDTYAAALRTINPLKAHS
LANKKENTLPNLWINYANVYASQNDVKTANLIFSKSVKSQFQSPDDLATLYIEWCELFVK
HNDDKKAIEIVEDICTSERGKFDYNDSSIDIHIRVQKSIKLWSFYLDLLESMIENNNQID
EIEKVINAYNITIDLKIATPLTIINFANFLEEWNFYERSFSAYEMGLKIFKDSKIKFEIW
NIYLSKIIKHELNIERIRDLFEQCLNESSIEGYNGCPANLCKPVYLLYSQYEQSKGWFTK
SVKILQQGLSKLDDGYNQEFYTKAEKDTILRDKFDIYQVLISKILKLNDHNETRKIYEQS
LKDNQLTLPNLIQLTMEFINFETELMEFNRVRSLFKYVCQLSNPQSPLIEPIWHNWETFE
LNHGNEATFKDMLRFKRKIVTEFEKDIILKNSLNPMGFVKSSQGPKVSSIAISAPKEENN
PDSIDLDMDM
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggatcagtatgggatatagaaggactactttgtgaagacgatattccatacgaa
caagaggtagcaaaaaatcctaataatttatcaaattggttaagatattatagatttaaa
tcatcgacatcatcatgtacatttcaaaatagagtattcattctagaaagggcagttaaa
caattaccaaggtcatacaagttatggatgatttatattgacgtagttttacaggaagta
cagacttcagtcagctataagagtaaatccgaaattcttctggttaacatggtattcgaa
aggtcgctacaattactcaatagagcaccgatattatggatcaaatatctagaatttcta
gttgagacacagccttacgaaataacattgctaagaagaaaattcaacgaatgtttgtat
aatttgccaataagtcaacatcatttaatttggccattatatatacgatttgcggatgat
gttggaggaatgacaggagtcaaggtttacttgaaatatttgcagtatgccaaccctgaa
tcgcttcagggattgaataatgagcaggagggcgagcttggaataactatagatgatata
atttcgaagttggtggaatttggtgatgttaaagaggcatctaaactatttcagcacatt
ttacaacatactgacaagtttattggcttatcgaagtcaccattgcagttgtggatcgag
tatattgacttgttagtaaattccgtctcaaaaaataagcgaagtacagtgaattataat
gaatttgactatttctttgagaaattaatcaaggatggattgcagaaatttccagaccaa
ataggtaagttttacttgaaattgactttttattttatcaaacgtaaaaacctttttaaa
gctagatattattttgatgaaggtttgaaaacatgtgtttcagttaaggattttactatg
atatttgattcatataccgaatttgaggaaaacattttaacaaatatgagtgaaaagctt
gaaaaattaggtgaagattcagacttgaataatgagttggatttaagaatgaatgttttc
gaaaaattaataaatgacagaccatatttattgaacgacatgatgctaagacaagatgtg
aataatttggatgaatggtttaaaaaaatagtgctctacaagaaagatagcgatatcaat
atgatgctagatacttatgcagcggcattgaggaccattaatcctttgaaagctcactcg
ttggctaacaaaaaggaaaacacattacccaacctatggattaattatgcaaatgtttat
gcctcacagaatgatgttaagacagcgaaccttatattctccaaatctgtaaaatctcaa
tttcaatctcctgatgatcttgctactttatatattgagtggtgtgagctttttgtaaag
cataatgatgacaagaaagcaattgaaattgttgaggatatatgtacttcggaacgtggt
aaatttgattacaacgattcttcgattgatatacatataagagttcaaaagtctatcaaa
ttgtggtctttttatttggatttgttagagtcaatgatagagaacaataatcagattgat
gagatagagaaggtaattaatgcatataatataacaattgatctcaagattgctactcct
ttaactataattaatttcgctaactttttggaggaatggaacttctatgaacggtcattt
tccgcgtatgaaatgggattgaagattttcaaagattccaaaataaaattcgaaatttgg
aacatatatctttcgaaaataataaagcatgagttaaatatagagagaataagagattta
tttgagcaatgcttgaatgaatcctccattgaaggctataatggatgccctgcaaactta
tgcaaacccgtttacttgctatactctcaatacgaacaaagtaaagggtggtttactaaa
tcagttaagatcttacaacaagggttgagtaaattggatgatggttataatcaagaattt
tataccaaggcagaaaaggatactatactaagggacaagtttgatatttatcaagtctta
atcagtaaaatactcaaacttaatgaccataatgagactagaaagatttatgagcaatca
ctcaaagacaaccaactaacattacctaatttgattcagttaaccatggaatttatcaac
tttgagactgaattaatggaatttaatcgggttagatcgttatttaaatatgtgtgtcaa
ttatctaaccctcaaagtcctttgatagaaccaatttggcataattgggaaacatttgaa
ctaaatcatggcaatgaagctacatttaaagatatgctaagattcaaaagaaagattgtc
acagagtttgaaaaggatattattttgaagaattcgttaaacccaatgggttttgtaaag
tcgtctcaaggaccgaaggtatcatctattgccatatctgcaccaaaagaagaaaataat
cccgattctatagacttagatatggatatgtaa
DBGET
integrated database retrieval system
