Debaryomyces hansenii: DEHA2E09724g
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Entry
DEHA2E09724g CDS
T01026
Name
(RefSeq) DEHA2E09724p
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
dha
Debaryomyces hansenii
Pathway
dha03018
RNA degradation
dha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
DEHA2E09724g
09123 Folding, sorting and degradation
03018 RNA degradation
DEHA2E09724g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dha03019
]
DEHA2E09724g
03041 Spliceosome [BR:
dha03041
]
DEHA2E09724g
Messenger RNA biogenesis [BR:
dha03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DEHA2E09724g
mRNA degradation factors
5'-3' decay
Lsm complex
DEHA2E09724g
Spliceosome [BR:
dha03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
DEHA2E09724g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
2902439
NCBI-ProteinID:
XP_459729
UniProt:
Q6BPZ1
LinkDB
All DBs
Position
E:join(770506..770514,770585..770804,770878..771017)
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AA seq
122 aa
AA seq
DB search
MDNPRQNNNNNNTNRRRNNNSSKPDGPKREAILDLNNYKDKQIRVKFIGGRQVIGVLKGF
DQLMNLVLEDVKENIRDPEDDNVLTDKTRDIGFVVVRGPSLLTISPVDGSEIIDNPFANQ
EE
NT seq
369 nt
NT seq
+upstream
nt +downstream
nt
atggataacccaagacaaaataacaataataataatactaatagaagaagaaataataat
tcttcgaagccagatggccctaaaagagaagccattttggacttgaacaattacaaagat
aagcagataagagttaagtttataggcggtagacaggttattggagttttaaagggattt
gaccagttgatgaatttagtgttggaagatgttaaggaaaatattagagacccagaagac
gataatgttttgaccgacaagactagagacataggctttgtggtagtaagaggcccatca
ttattgaccatttctccagtcgatggcagtgaaataatcgataatccttttgccaaccaa
gaagaataa
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