Debaryomyces hansenii: DEHA2G17248g
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Entry
DEHA2G17248g CDS
T01026
Name
(RefSeq) DEHA2G17248p
KO
K03679
exosome complex component RRP4
Organism
dha
Debaryomyces hansenii
Pathway
dha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DEHA2G17248g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dha03019
]
DEHA2G17248g
Messenger RNA biogenesis [BR:
dha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
DEHA2G17248g
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
DEHA2G17248g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
DUF2110
Motif
Other DBs
NCBI-GeneID:
2905226
NCBI-ProteinID:
XP_462289
UniProt:
Q6BHN2
LinkDB
All DBs
Position
G:complement(1408893..1409933)
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AA seq
346 aa
AA seq
DB search
MVLEMDVTDVISITKPESHDIGIDSDVEMSDGEETSKNEQSIVTPGELVTDDPVWMKGHG
TYFLNDKTYSSVAGNVSRVNRLLSVVPLRGRYQAETGDHIVGRITEVGPKRWKVDIGAKQ
SAILMLGSVNLPGGVLRRKSESDELQMRGFLKEGDLLNAEVQSIFSNGSASLHTRSLKYG
KLRNGIFVKVPSNLIIKSKNHSHNLPGNISVILGVNGYIWLSKTSSSGKSNANASSNKAQ
ASIDAHGSYNPGQGSVSITRLEEESSWEIYSDKNDPNISNSVRSNITRYYNVIKALGYGE
LGITEQRITMGYEASLAYANVGKLIDKDAMASICQDVINNEKMRGN
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggtattagagatggatgttacagatgttataagtatcaccaaaccggagtctcatgat
attggcattgattcagatgtggaaatgtcagacggggaggaaaccagtaaaaatgaacaa
tctattgtaacaccaggtgaattggtgactgatgatccagtttggatgaaaggtcatggt
acatactttttaaacgataaaacgtattcttccgttgcaggtaatgtttctagagttaat
agattattaagtgttgttcctttgaggggcagataccaggcagaaactggtgatcatata
gttggaaggataactgaagttggtccaaagaggtggaaagttgacattggagcaaaacaa
agcgctatattgatgttgggatcagtcaacttaccaggtggtgttttgagaagaaaatca
gaaagtgatgaattacaaatgagaggttttttgaaggagggtgatttattgaacgctgaa
gtgcaaagtatatttagtaatggtagtgcttcattgcataccagatccttgaagtatgga
aaattgagaaatggaatattcgtaaaggttccttcaaatttaattattaaatcaaagaac
cattcgcataatttgcctgggaatataagtgtgatattgggagttaatggatacatatgg
ttgagtaaaacttccagcagtggaaaaagtaatgccaatgcaagttctaataaggcacag
gcttccattgatgctcacgggtcttataatccaggtcaaggatctgtctcaattacaaga
ttagaagaagaaagttcttgggaaatttattccgataaaaatgatccaaatatttccaat
tcggtccgtagcaatattaccagatattataacgttataaaggctttgggttatggtgaa
cttggaataacggagcaaagaattacgatgggttatgaagcaagtttggcatatgcaaac
gttggaaagttgatagataaagatgcaatggcaagcatatgtcaagatgtaataaacaat
gaaaaaatgagaggcaattaa
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