Desulfitobacterium hafniense DCB-2: Dhaf_0131
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Entry
Dhaf_0131 CDS
T00822
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dhd
Desulfitobacterium hafniense DCB-2
Pathway
dhd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dhaf_0131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dhd03400
]
Dhaf_0131
Enzymes [BR:
dhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dhaf_0131
DNA repair and recombination proteins [BR:
dhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Dhaf_0131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
DUF6026
Motif
Other DBs
NCBI-ProteinID:
ACL18200
UniProt:
B8FZB7
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All DBs
Position
136541..140134
Genome browser
AA seq
1197 aa
AA seq
DB search
MGVLLADVHGFVLPERKDFLKTLSHYLRLGFDIEAVDKAISYKEWPQMIYNLTGSQKPAF
AAQLIQKGKPGLIITYSEELAQKWVNDLRSWLPGEDVLYFPSSEWLPFEVLGKSRETTIE
RIRVLNRLAQDNQCTVVVPALAVNQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGY
ERLDVVDGKGQFAIRGGIMDIAPLDGEPLRVEFFDDEVDSIRVFDLETQKSTETLKSVKI
PPALEVVIRPEELEKLGWEVRAQARKQAGRLNRSGRSDVAEQVMKQAQRIEERLKTGRVD
ESIYPYLSLLEEPLEPFFSLLSQDHYVILDEPLRLKEQLEFQQKERLEEYTQALAKGEEF
YSPEDQFVSYEQFLRYGEKHPFVLISTLPREIPGVAPKRIFNLNARPLTGFMGKTGILVD
EIEHWQKSGHIVNLFVGDEEHAERMLQGLRDRGALAKKHELHEPVQEGGVYVYSSSLDQG
FELPLSKLIVLSEAEIYKRERKAAVKRKKAPEKTGQRLQFADLKPGDFVVHVHHGIGQFM
GIERIAVGGVEKDYFSVKYAGQDKLYVPLDQLNFLQKYLGSDAETLPKLYKLGGSEWKKV
KAKAKSAIKEMAFDLVKLYAQREATKGYAFSPDNVWQQEFEEKFPYQETPDQMQCIVEVK
QDMMRQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHFNTFQERF
MGYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKLVSDSIKFKDLGLLIVDEEQR
FGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFPVQTYVAEF
RPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQMSEKELEQE
MLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGLGQLYQLRGRVGRSNRRAYSY
FLYKPQKVLTEVAEKRLAAIREFTEFGSGLKIAMRDLEIRGAGNLIGAQQHGHLAALGFE
LYSQMLKEAVQELKGEQVEEKIETSIEVQVDAYLPDIYIGERQLKAALYQRMVAIDNEED
LSMMIDELIDRFGTPPREVENLLKIVRIKWMASGMKIEQIQQLKQQMVFRFAADPGISGE
MLMTMATQSPYPVSFGTTGNGNLEIKVRLRSVVQEELLEAIHKVLMVFNGIASKTAS
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcctcttggcggatgtccatggttttgtgttgcctgaaaggaaggattttttg
aaaaccctcagccattatttgcgtttaggcttcgatattgaggcagtggacaaggcgata
tcctataaggaatggccgcaaatgatctataatttaacaggaagtcagaagcctgccttt
gctgcccagctgatccaaaagggtaagccggggctgattattacttattcggaggagctt
gcgcaaaaatgggtcaatgacttgcgttcctggcttcccggggaagatgtgctctatttt
ccctcctcggaatggctgccctttgaggtcctgggcaaaagccgtgagaccaccatcgag
agaatccgggttctcaaccgtttggcacaggataaccaatgtacggtggtcgtgccggct
ttggcagtgaatcagcggagcttttcccgccgccgttggcaggagtacatcctggaatta
aaggaagggacatcctatgatctgaaagatcttgcccagaagctgagcacggcaggttac
gagcggctggacgtggtggatgggaagggtcaatttgcgattcggggcgggatcatggat
attgctccactggatggggagcctttacgggtcgagttttttgatgatgaagtggactcc
atccgggtcttcgatctggagacccaaaaatccactgagaccctgaaaagcgttaaaatc
cctccggccttggaggttgtgattcgccctgaggaattggagaagctgggctgggaggtt
cgggctcaggccaggaagcaagctggacgcttaaaccgcagcggtcgttcggatgtggcc
gagcaggttatgaaacaagcccagaggattgaagaacggttgaaaacaggccgggtggat
gaaagcatctatccctatctgagccttcttgaggagcccctggagccttttttctcactg
ctttctcaagatcattatgtcattttggatgagccactgcggctgaaagaacagctggag
ttccaacagaaggaaaggcttgaggaatatacccaggctttggccaagggtgaggaattt
tatagccctgaggatcaatttgtaagctatgaacaattcctgagatatggggaaaagcat
ccgtttgttttgatctccaccttacccagagaaattcccggggtggctccgaaacggatt
ttcaatttaaatgcccggcctttgacgggctttatggggaaaaccgggattttggtggat
gagattgagcattggcaaaaatccggccatattgtaaatcttttcgttggtgatgaagag
cacgcagagcggatgctgcaaggtttaagggatcggggagctctggccaaaaagcatgag
ctccatgagccggttcaggagggcggagtctatgtctattcatcctcccttgatcagggg
tttgagcttcccttaagcaagctgattgtcctgagtgaggcggagatttataaacgggag
cgcaaagcggccgtcaagcgcaaaaaggcccctgagaaaacagggcagaggctgcaattt
gcggatcttaagccgggagactttgtggtccatgttcatcatggcattggtcaatttatg
ggcattgagcggattgccgtggggggagtggaaaaggactatttttcggtcaaatatgcc
ggccaggataagctctatgttcccctggatcagcttaactttttgcagaaatatttagga
agtgatgcggagaccctgcccaagctttataagctggggggttccgaatggaaaaaggtc
aaggccaaggcgaaaagcgccattaaggaaatggcctttgatttggttaaactttatgcc
cagcgggaggcgaccaagggctatgccttttctcccgataatgtctggcagcaggaattt
gaggagaagttcccctaccaggagaccccggatcaaatgcaatgcatcgtcgaagtcaaa
caggatatgatgcgccagcggcccatggatcgcctgctctgcggggatgtgggctatggc
aagacggaggtggccctgcgggcggcctttaaggcggttatggacagcaaacaagtggcg
gtcctggttcccaccaccatccttgctcagcagcattttaatacctttcaggagcgtttt
atgggctatcctgtgagcatccagatgctgagccgttttcgctccgccaaggagcagaaa
ctgattctgcagggattaaaggaaggctccattgatattgtggtggggacccataagctg
gtctcagattcgattaagtttaaggatttgggacttttaatcgttgatgaagagcagcgg
tttggggtggcccataaagagaagctgaaaacccttaaagccaatgtggatgtcctcacc
ctgtcggccacacctattccccgtaccttgcatatgtctctggtaggggtgcgggacctc
agtatcattgagaccccgccggaggatcgttttcccgtccagacctatgtggcggaattc
cggccggatgtggtgagagaagccattcgccgggagatccagcgggggggccaggtcttc
tttgtccataaccgtgtggaagatatggagcaggtggttcatttcctcagccagctggtc
cctgaggcccgctacggcattgcccacgggcagatgagcgaaaaagaattggagcaggag
atgctggcttttctggagcatgaaagcgatgtcctggtctgcaccaccatcattgagaca
ggcttggatatgcctaatgtcaacaccctgatcattgatgaggcggatcgccttggtctg
gggcagctttatcagctgcggggccgggtagggcgttccaaccggcgggcttattcttac
tttttatataaaccccaaaaagtgcttacagaagtggcagaaaagcgcctggcagccata
cgggaatttaccgagtttggctccggccttaaaattgccatgcgggacttggagattcgc
ggggccgggaatctgattggagcccaacagcatggtcatttagctgccttgggatttgag
ctttatagccagatgcttaaggaagcggtacaggagctcaagggtgagcaggtggaggaa
aagatcgagaccagtatcgaggttcaggtggatgcctatctgccggatatctatattggg
gagcgccagcttaaagcggctctctatcagcggatggtagccatcgataatgaagaggac
ctcagcatgatgatcgatgaattgattgaccgtttcggcactccgccccgggaagtggag
aatcttttgaagattgtccgaattaaatggatggcctcagggatgaagattgaacagatc
cagcagctcaagcagcagatggtgttccgctttgcggctgaccccggcatatccggggaa
atgctgatgaccatggcgacccaatccccctatccggtttcctttggaaccaccggcaac
ggcaatcttgagatcaaggtccgtttgcgctccgttgtccaagaggagcttttagaagcg
atccataaagtgttaatggtatttaatggtattgcgtccaaaacagcatcctga
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integrated database retrieval system
