Desulfitobacterium hafniense DCB-2: Dhaf_3118
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Entry
Dhaf_3118 CDS
T00822
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dhd
Desulfitobacterium hafniense DCB-2
Pathway
dhd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dhd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dhaf_3118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhd03019
]
Dhaf_3118
03009 Ribosome biogenesis [BR:
dhd03009
]
Dhaf_3118
Enzymes [BR:
dhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dhaf_3118
Messenger RNA biogenesis [BR:
dhd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dhaf_3118
Ribosome biogenesis [BR:
dhd03009
]
Prokaryotic type
rRNA helicases
Dhaf_3118
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACL21141
UniProt:
B8G080
LinkDB
All DBs
Position
complement(3330695..3332287)
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AA seq
530 aa
AA seq
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MSAERLQSFGEISLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGVDLIGQAQTGTGKTAA
FGIPICEKVNPKFQAVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIR
ALRFGSQVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPKE
ERQVMLFSATMPPEIKKLAQNYMHQPKSVAVSRDELTVPLIEQVFYEARDKIKVDALCRI
IDMEDIGQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELL
VATDVAARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRL
IERLIKTRIIRKELPTLADVSERQAENLKNQLVKILQRSHLGTYRSIVGSLLEEYDSMDV
AAAALKFAVEGVEERSEEEDDIAFGNTGAAPGMVRLFMNIGRLQQVRPQDIVRWIADESG
IPGNIIGMINIYDKFTFVEIPEQHASRVLSCMHQNMIKGRKVNVEPAKAR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgcagaacgtttacaatcttttggtgaaataagtctgagcaagcaagtgctgcag
gcattatcagaaatggggtttgaggagccctctccaattcaaaaagcagccattcccgtg
gctatggatggtgtggatttaatcggccaggcccaaaccggtacaggaaaaactgccgcc
tttgggattcccatctgtgaaaaagtcaaccctaagtttcaggcagttcaagccttgatt
ctgacaccaacccgcgaactggccgttcaggtgtcggaagagatcagcaagatcgggaaa
tatcgccatattaaacccttgcccatttacggaggccaatccatcgaccgtcagatccgg
gcattgcgcttcggcagccaggtggtggtaggaactccgggtcgtatccttgatcattta
aatcgcggaaccctaaaattgcagtatgtaaaaatggtggttctggacgaagccgatgaa
atgctggatatgggctttgttgaggatatagaaacgattcttaagcaagttcccaaagaa
gagcgccaggtgatgcttttctcggctaccatgccgccggaaattaagaaactggctcag
aattatatgcaccagcctaaatccgtagccgtaagccgtgatgagctcactgtgcctttg
attgagcaagtcttttatgaagccagagacaaaatcaaagtggatgccctctgtcggatt
attgatatggaagatatcggtcaagccattatcttctgtcggaccaaaagaggggttgat
gagcttgtggccgctctggaggcaagagggtattttgcagatgccctgcatggtgattta
agccaacagcagagagaccgggtcatgaagaagttccgtgacggcaaggttgagttgctt
gtggctacggacgtggcagcccggggactggatatcgataacgtaacccatgttattaac
ttcgacattccccaggatcctgaatcttatgttcatcggatcgggcgtaccggcagagcc
gggagaaaaggccaggctattaccttggtttcttcccgggaataccgtcaactccgcttg
atcgaacgtttgatcaagacccggatcatacgcaaagagttaccgaccctggccgatgtc
agtgaacggcaagcggaaaatctcaagaatcagctggttaagattttgcagcgaagccac
ttgggaacctatcgctccatcgtgggatctttgctggaagagtatgattctatggatgta
gcggcagcagccttgaaatttgctgttgagggtgttgaggagcgaagtgaagaggaagat
gatattgcttttggcaatactggagcagcccctggtatggtccgcctctttatgaatatt
ggccgtcttcaacaggttcgccctcaggacatcgtccgttggatagctgacgaaagcgga
attcccggcaacattatcgggatgatcaacatctatgataaatttacctttgtggaaatc
cctgaacaacatgccagccgggttctcagctgcatgcatcagaacatgattaaaggccgt
aaggtcaacgtggaaccggctaaagccagataa
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