Desulfitobacterium hafniense DCB-2: Dhaf_4735
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Entry
Dhaf_4735 CDS
T00822
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
dhd
Desulfitobacterium hafniense DCB-2
Pathway
dhd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dhaf_4735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dhd03400
]
Dhaf_4735
DNA repair and recombination proteins [BR:
dhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dhaf_4735
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dhaf_4735
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
DUF87
SWI2_SNF2
UB2H
Kinesin
AAA_22
AAA_16
UvrD-helicase
Microtub_bd
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ACL22730
UniProt:
B8FYX8
LinkDB
All DBs
Position
complement(5056849..5058900)
Genome browser
AA seq
683 aa
AA seq
DB search
MEFRLRAPYKPSGDQPQAIDALVESIHSGRRHQTLLGVTGSGKTFTMANIIEKVQRPTLI
LAHNKTLAAQLYTEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKM
RHSATAALFERRDVIVVASVSCIYGLGSPEEYRDLMVSLRQGQEIDRNDILKKLISIQYD
RNDLAFERGTFRVRGDVVEVHPAGSSEHAVRIEMFGDEIEHIYEINVLTGEILGERRHVS
IFPNSHYVTARDKVLVAAENIEKELEEQLRRFKDEDKLLEAQRLEQRTRYDLEMLREMGF
CNGVENYSRHLTFREAGETPYTLLHFFPEDYLMMIDESHVTLPQVRGMYEGDRSRKTTLV
DYGFRLPSALDNRPLKFAEFETLVPQRVYISATPGPYELEHCPQIVEQIIRPTGLLDPEI
SVRPTKGQIDDLIGEINQRIARDERVLVTTLTKKMAEDLTDYLKNLNMAVKYLHSDITTL
ERVEILRELRLGDIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAA
RNAQGKVIMYADQMTRSMEVAIGETNRRRAIQEAYNEKHGITPQTIRKKIYEIPEATKVA
EKKAAYGSKMPAEELAELLKSLEQEMRLAAKDMDFERAAEIRDAMIELKGEENKYKRPTQ
GRARKREAAAPAGRKSGPRKRGG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggagttccgtttacgcgctccctacaaaccctccggggatcagcctcaggccattgat
gctctggtcgaaagtatccattccggcagacgtcatcaaaccctgctgggggtgacaggt
tcaggaaaaacctttaccatggccaacatcatcgaaaaagttcaacggcccactctgatt
ctcgcccataataagaccttagcggctcagctttacactgagttcaaggaattcttcccg
gaaaatgcagtggaatatttcgtcagttattatgattattatcagccggaagcttatgtt
ccttccagcgatacctatatagaaaaggattcttcgatcaatgatgagatcgataaaatg
cgccactccgctacggcggccttgttcgaacggcgtgatgtgattgtggtggccagtgtg
tcctgcatctatggcttgggttcccctgaggaataccgggatttgatggtttccctgcgg
caggggcaggaaattgaccgcaatgacattctcaaaaagctcatctccattcagtacgat
cgcaatgatctggcttttgaacggggaactttccgtgtccggggagatgtggtggaagtc
catcccgccggctccagtgagcatgctgttcggatcgaaatgttcggggatgaaatcgaa
catatttacgagatcaatgtccttaccggtgaaattttgggagaacgccggcatgtctcc
attttcccgaattctcactatgtcacggcacgggataaagtattggtagctgctgagaat
attgaaaaggaattggaagagcagctcagacggtttaaggatgaagacaaacttttggaa
gctcagcgtttagagcagagaacccgctatgatctggagatgctgagggaaatgggattt
tgcaatggcgttgaaaactattcccgccatttaaccttccgggaggccggagaaactcct
tatacccttttgcactttttcccggaagattacctgatgatgattgacgaatcccatgtc
acgctgcctcaggtccggggtatgtatgaaggggaccgttcccgtaaaaccactctggta
gactacggattccggctgccctctgctttggataaccgccccttaaagtttgctgaattt
gaaacgctggtccctcagcgggtttatatcagtgctactcccgggccttatgagctggaa
cattgcccccagattgtggagcaaattattcgccctaccgggcttttggatccggagatt
tcggtccggcccaccaagggccagatcgatgatctgatcggggaaatcaaccaaaggatt
gcccgggatgagcgggtgctcgtcactaccctgaccaaaaagatggcagaggatttaacg
gattacctgaaaaatctcaatatggccgttaaatacctccactccgatattacaaccctg
gagcgggtggagatcctgcgggaattgcgtttgggagatatcgatgtcatcgtgggcatc
aatctgctccgggagggcttggaccttcccgaggtttccctggtggctattctcgatgcg
gacaaagagggttttctccgtgccgagcgctccctgattcagaccattggccgcgccgcc
cggaatgcccagggaaaagtcatcatgtatgcggaccaaatgacccgctccatggaagtg
gccatcggcgaaaccaaccgccgccgggccatccaggaagcctataatgaaaagcatggg
attacccctcagaccattcgcaagaaaatctacgaaatcccggaagccactaaggtggcg
gaaaagaaagcagcctatggatcaaaaatgccggccgaggaattggctgagctgctcaaa
agtctggaacaggagatgcgcttagccgctaaagatatggactttgaacgggcagcggag
atccgggatgcgatgatcgagcttaaaggggaagagaataagtataagcggcccacccag
ggccgtgcccgcaagcgagaggcggcggctccggcagggcgtaagagtgggcccaggaag
aggggcgggtag
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