Drosophila hydei: 111600622
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Entry
111600622 CDS
T05888
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dhe
Drosophila hydei
Pathway
dhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111600622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dhe03019
]
111600622
03041 Spliceosome [BR:
dhe03041
]
111600622
03009 Ribosome biogenesis [BR:
dhe03009
]
111600622
03016 Transfer RNA biogenesis [BR:
dhe03016
]
111600622
Enzymes [BR:
dhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111600622
Messenger RNA biogenesis [BR:
dhe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111600622
Spliceosome [BR:
dhe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111600622
Complex C
U4/U6.U5 tri-SnRNP related factors
111600622
Ribosome biogenesis [BR:
dhe03009
]
Eukaryotic type
Pre-60S particles
Helicases
111600622
Transfer RNA biogenesis [BR:
dhe03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111600622
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
111600622
NCBI-ProteinID:
XP_023172596
UniProt:
A0A6J1LWI2
LinkDB
All DBs
Position
Unknown
AA seq
1066 aa
AA seq
DB search
MDINELFDCFNEAPNESLQLPLPIPTKKAKVNQAEKNSSAGVNKTRKANIRESTGTDADV
STKEHTEENADKKESAKRQRVDINTETEEIPDNESDNEVNYEIEDKEEELDDCALEALRV
RIVTHQLVSPESCTHEVAAHPDQEYIPLQPFTGVPAKEYPFVLDPFQKQAILCIDNSQSV
LVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFQDVGLVTGDVT
INPSASCLIMTTEILRNMLYRGSEIMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNV
RYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQ
FKEDNFTTAMAVLANAGEAAKGDQKGRKGGVKGHNSGQTNIFKIVKMIMERHFAPVIIFS
FSKKECEVYAMQMAKLDFNTVDEKKLVDEVFHNAMDVLTEEDRRLPQVENVLPLLRRGIG
IHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWIS
SGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPVVGREIVQGKADTLNSAFHLTYNMVLNL
LRVEEINPEYMLERSFYQFQNQAALPGLHDQVQQKTQQLNKLTIKDEHNIASYHHIRDQL
DINGSKFREWLTKPQYLVPFLQPGRLVKVSAGKQEYDWGIVLNFKKQEQSRKNPLKGEPG
VVIDVLLHVSEDAAKTGETEPCPPNERGCMEVVPVANTLITQISSIRVYFPNDLRTADNR
RAVLKTIQEAKKRFPLGPPVLHPIDDMNIKDSEFRKIVDTIAQFEQLLEEHPLHKSPELE
RIHKRYLDKLKLQTEVNSLKAELKAARSLLQMDELKFRKRVLRRMGYCKPGDVIEFKGRV
ACELSSADELLITEMIFNGVFNELSAPQAVALLSCFVCDEKSAESPKSATELSGPLRSLQ
SLARRIAKVSTECKLNLDEDNYVEKFKPFLMDVVLAWCKGSTFLNVCKMTDIFEGSIIRC
MRRLEELLRQLCQASKTIGNTDLENKFSEGIRLLKRDIVFAASLYL
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atggatataaatgagttatttgattgttttaacgaagcgccgaatgaaagcttgcagtta
ccgttgccaatacccacaaaaaaagcaaaagtaaaccaggccgagaaaaattcttctgct
ggcgtcaataaaacgagaaaagcgaacatacgtgaatcaactggaacggatgcagatgtc
agcaccaaggaacatacagaagaaaatgctgataaaaaagagtctgccaagcggcagcgt
gttgacataaacacagagacagaggaaattcctgacaatgaatcggataatgaagtcaat
tatgaaatagaggataaagaagaagagctggacgattgtgcattggaggcgctgcgcgtg
cgtattgtcacccatcagctggtgtcgccagagtcctgcacgcatgaggtagccgcccat
cccgatcaggagtacattcctctacagccatttacgggcgtacctgccaaagaatatcca
ttcgtgctggatccattccagaagcaggcgattctctgtattgataactcgcagagtgtc
ctggtatcggcacacacatcggcgggcaagactgtggtggcggagtatgccattgcaaag
tcgctggcagctaaacagcgcgttatttacaccacgcccattaaggcgctatccaatcaa
aagtttcgcgagttcacagatgagtttcaggatgtgggtctggtcacgggagatgttacc
atcaatccctcagcctcctgtttgatcatgacaacggaaattctgcgtaacatgctgtac
cgtggcagcgaaataatgcgcgaggtgggctgggtgatattcgatgagattcattatatg
cgtgataaggagcgtggagtagtgtgggaggagacacttattctattacctgacaatgtg
cgctatgtctttctttcggccaccatacccaatgcccgacaatttgccgaatgggtttgc
catctgcacaaacaaccttgtcacgtggtctacacggattacagacccacgccgttgcag
cattatatttttccagccggaggcgatggtatccacctaattgtcgacgagaagggccag
tttaaggaggataacttcactacggccatggcggtgttggccaacgcaggtgaggcagct
aagggcgatcagaaaggtcgcaagggtggcgtcaagggtcacaactcaggccaaacaaat
atattcaaaattgtcaagatgataatggagcgtcactttgcgcccgtcatcattttctcg
tttagtaagaaggaatgcgaggtatatgccatgcaaatggccaaactagactttaatact
gtcgatgagaagaagctggtggatgaggtctttcacaatgccatggatgttctcacagag
gaggatcgtcgcttgccacaggtggagaatgtgttgcccttactgcgacgtggtattggc
atacatcatggcggactgctgcccattctcaaggagaccattgagattctgtttggcgaa
ggtctgatcaaggcgctcttcgccacagagacctttgccatgggtctaaacatgcctgcg
cgcacagttctgttcacagcgccccgtaaattcgatggtaaggacttccgttggatcagc
tcgggcgagtatatccaaatggctggacgtgctggccgtcgaggtctggacgacaagggc
attgttatactgatgattgatgagaaggtgtccccagtggtgggccgtgagattgtacag
ggcaaggcagacactctcaactctgcgttccatctcacctacaacatggtattgaatctg
ctgcgggtggaggaaatcaacccagagtatatgctggagcgcagcttctatcagtttcaa
aatcaggccgcactgcccggtcttcacgatcaggtgcagcagaagacacagcagctgaat
aagctaaccatcaaggatgagcacaatattgcgtcctatcaccacattcgcgatcagctc
gatatcaatggcagcaagttccgcgaatggctaaccaagccacagtatctggtgcctttt
ttgcagccaggtcggctagtgaaagtgtccgctggcaagcaggagtacgactggggcatc
gtattgaactttaaaaaacaggagcagagtcgcaagaatccattgaagggcgaaccgggc
gttgtcatcgatgtacttctgcatgttagcgaggatgcggccaagacaggtgagaccgaa
ccctgtccgcccaacgaacgtggctgcatggaggtagtgcccgtagccaatacgctgatc
acccaaatcagctccatacgcgtctactttcccaacgatctgcgcacggctgacaatcgc
cgagccgtcctgaagaccattcaggaggcgaagaaacgatttccacttggtccacctgtg
cttcatcccatcgacgacatgaatatcaaggacagtgaatttcgcaagattgtggacaca
attgcacagttcgagcaattgctcgaagagcatccgttgcataagtcgccggaactagag
cgcattcataagcgctatctcgataagctgaagctacaaaccgaggtgaacagcctgaag
gcggagttgaaggctgcgcgcagcctgctgcagatggacgagctgaagttccgaaaacgc
gtgcttcggcgcatgggttactgcaagccaggcgatgtcatcgaatttaaaggtcgcgtt
gcctgcgagctgagctccgcggatgagttgctcatcaccgaaatgatattcaatggcgtg
ttcaacgagctctctgctccgcaagctgtggcgcttctctcctgcttcgtatgcgacgag
aagtctgctgagtcgccgaagagcgccaccgagctatccggcccgttgcgctccttgcaa
agtttggcgcgtcgcattgccaaggtgtccaccgaatgcaaactgaatctggatgaagac
aactatgtggagaaattcaagcccttcctaatggacgttgtgctggcttggtgcaagggc
tccacttttttgaatgtctgcaaaatgacggacatctttgagggctccataattcgctgc
atgcgacgcctggaagagctgctgcgtcaactgtgccaggcatccaaaacgatcggcaac
acagatctggagaacaagttctccgaaggcattcgattgcttaagcgcgacattgtcttt
gccgcctcgctgtatctatag
DBGET
integrated database retrieval system
